RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 C7orf43Q8WVR3 580 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 LTBP1Q14766 1721 aa13.13□□□□□ -0.31
SS18-213ENST00000579640 BRCA1P38398 1863 aaKnown RBP13.13□□□□□ -0.31
SS18-213ENST00000579640 ATP5JP18859 108 aa13.12□□□□□ -0.31
SS18-213ENST00000579640 ADORA1P30542 326 aa13.12□□□□□ -0.31
SS18-213ENST00000579640 DALRD3Q5D0E6 543 aaKnown RBP13.12□□□□□ -0.31
SS18-213ENST00000579640 PI4K2BQ8TCG2 481 aa13.12□□□□□ -0.31
SS18-213ENST00000579640 ZNF512BQ96KM6 892 aaPredicted RBP13.12□□□□□ -0.31
SS18-213ENST00000579640 UFL1O94874 794 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 UQCRFS1P1P0C7P4 283 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 CAVIN4Q5BKX8 364 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 BMP2KLQ5H9B9 411 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 TTC39AQ5SRH9 613 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 DPP8Q6V1X1 898 aaPredicted RBP13.11□□□□□ -0.31
SS18-213ENST00000579640 SNAP23O00161 211 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 ZBTB22O15209 634 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 CCDC93Q567U6 631 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 TBC1D16Q8TBP0 767 aa13.11□□□□□ -0.31
SS18-213ENST00000579640 GNL3LQ9NVN8 582 aaKnown RBP13.11□□□□□ -0.31
SS18-213ENST00000579640 TSHZ3Q63HK5 1081 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 CCDC102BQ68D86 513 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 RTKN2Q8IZC4 609 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 SUPT20HQ8NEM7 779 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 EYA3Q99504 573 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 FHDC1Q9C0D6 1143 aaPredicted RBP13.1□□□□□ -0.31
SS18-213ENST00000579640 MED23Q9ULK4 1368 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 IRS2Q9Y4H2 1338 aa13.1□□□□□ -0.31
SS18-213ENST00000579640 C6orf229H3BNL8 230 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 C21orf2O43822 256 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 ARID4AP29374 1257 aaPredicted RBP13.09□□□□□ -0.31
SS18-213ENST00000579640 FBXO33Q7Z6M2 555 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 RTFDC1Q9BY42 306 aaPredicted RBP13.09□□□□□ -0.31
SS18-213ENST00000579640 POLLQ9UGP5 575 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 SNED1Q8TER0 1413 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 DUOX1Q9NRD9 1551 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 GSPT1P15170 499 aaKnown RBP13.09□□□□□ -0.31
SS18-213ENST00000579640 HIBADHP31937 336 aaKnown RBP13.09□□□□□ -0.31
SS18-213ENST00000579640 PHKA1P46020 1223 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 SLC51AQ86UW1 340 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 VPS37DQ86XT2 251 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 FAM84BQ96KN1 310 aaPredicted RBP13.09□□□□□ -0.31
SS18-213ENST00000579640 HAUS7Q99871 368 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 BOLA2Q9H3K6 86 aa13.09□□□□□ -0.31
SS18-213ENST00000579640 SEMA3EO15041 775 aa13.08□□□□□ -0.32
SS18-213ENST00000579640 BCAMP50895 628 aa13.08□□□□□ -0.32
SS18-213ENST00000579640 OLFM4Q6UX06 510 aa13.08□□□□□ -0.32
SS18-213ENST00000579640 ZNF804AQ7Z570 1209 aa13.08□□□□□ -0.32
SS18-213ENST00000579640 NLGN2Q8NFZ4 835 aa13.08□□□□□ -0.32
SS18-213ENST00000579640 PSMD1Q99460 953 aa13.08□□□□□ -0.32
SS18-213ENST00000579640 ZNF219Q9P2Y4 722 aaPredicted RBP13.08□□□□□ -0.32
SS18-213ENST00000579640 WTIPA6NIX2 430 aaPredicted RBP13.07□□□□□ -0.32
SS18-213ENST00000579640 GYG1P46976 350 aa13.07□□□□□ -0.32
SS18-213ENST00000579640 CNTROBQ8N137 903 aa13.07□□□□□ -0.32
SS18-213ENST00000579640 ZC3H12CQ9C0D7 883 aaKnown RBP13.07□□□□□ -0.32
SS18-213ENST00000579640 ARFGEF1Q9Y6D6 1849 aa13.07□□□□□ -0.32
SS18-213ENST00000579640 TRIM6-TRIM34B2RNG4 842 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 KLRK1P26718 216 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 EVI5LQ96CN4 794 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 SYT17Q9BSW7 474 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 VPS33BQ9H267 617 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 BCS1LQ9Y276 419 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 PDS5AQ29RF7 1337 aaKnown RBP13.06□□□□□ -0.32
SS18-213ENST00000579640 SDSP20132 328 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 MCAMP43121 646 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 WASHC4Q2M389 1173 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 TXNRD3Q86VQ6 643 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 TICAM2Q86XR7 235 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 COA1Q9GZY4 146 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 DENND2AQ9ULE3 1009 aa13.06□□□□□ -0.32
SS18-213ENST00000579640 AKAP11Q9UKA4 1901 aa13.05□□□□□ -0.32
SS18-213ENST00000579640 FKBP4Q02790 459 aaKnown RBP eCLIP13.05□□□□□ -0.32
SS18-213ENST00000579640 SPATA5Q8NB90 893 aa13.05□□□□□ -0.32
SS18-213ENST00000579640 DNAJC2Q99543 621 aaKnown RBP13.05□□□□□ -0.32
SS18-213ENST00000579640 PAG1Q9NWQ8 432 aa13.05□□□□□ -0.32
SS18-213ENST00000579640 AK9Q5TCS8 1911 aa13.05□□□□□ -0.32
SS18-213ENST00000579640 IL1R1P14778 569 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 RASGRF1Q13972 1273 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 TTF1Q15361 905 aaPredicted RBP13.04□□□□□ -0.32
SS18-213ENST00000579640 TDRD7Q8NHU6 1098 aaKnown RBP13.04□□□□□ -0.32
SS18-213ENST00000579640 RILPL2Q969X0 211 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 GPR101Q96P66 508 aaPredicted RBP13.04□□□□□ -0.32
SS18-213ENST00000579640 CD209Q9NNX6 404 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 HMG20BQ9P0W2 317 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 RFX7Q2KHR2 1363 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 FER1L6Q2WGJ9 1857 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 MYH13Q9UKX3 1938 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 FRAT2O75474 233 aaPredicted RBP13.04□□□□□ -0.32
SS18-213ENST00000579640 KIAA2012Q0VF49 1180 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 SCARF1Q14162 830 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 LTBP3Q9NS15 1303 aa13.04□□□□□ -0.32
SS18-213ENST00000579640 G3V3G9 751 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 GOLIM4O00461 696 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 RIMBP2O15034 1052 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 CDC45O75419 566 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 MAP4K4O95819 1239 aaPredicted RBP13.03□□□□□ -0.32
SS18-213ENST00000579640 ZAP70P43403 619 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 LRRFIP1Q32MZ4 808 aaKnown RBP13.03□□□□□ -0.32
SS18-213ENST00000579640 DCAF8Q5TAQ9 597 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 KBTBD3Q8NAB2 608 aa13.03□□□□□ -0.32
SS18-213ENST00000579640 TAOK3Q9H2K8 898 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms