RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 TAF1DQ9H5J8 278 aaPredicted RBP16.17■□□□□ 0.18
CLK3-224ENST00000568605 DDX19BQ9UMR2 479 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 RIPOR2Q9Y4F9 1068 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 MYO3BQ8WXR4 1341 aa16.17■□□□□ 0.18
CLK3-224ENST00000568605 POTECB2RU33 542 aa16.16■□□□□ 0.18
CLK3-224ENST00000568605 PSMD14O00487 310 aa16.16■□□□□ 0.18
CLK3-224ENST00000568605 CIAO1O76071 339 aa16.16■□□□□ 0.18
CLK3-224ENST00000568605 RFX5P48382 616 aaPredicted RBP16.16■□□□□ 0.18
CLK3-224ENST00000568605 GMPSP49915 693 aaPredicted RBP16.16■□□□□ 0.18
CLK3-224ENST00000568605 PTPN12Q05209 780 aaKnown RBP16.16■□□□□ 0.18
CLK3-224ENST00000568605 KLHDC4Q8TBB5 520 aa16.16■□□□□ 0.18
CLK3-224ENST00000568605 PANK1Q8TE04 598 aa16.16■□□□□ 0.18
CLK3-224ENST00000568605 PUS3Q9BZE2 481 aaKnown RBP16.16■□□□□ 0.18
CLK3-224ENST00000568605 GPRC5DQ9NZD1 345 aa16.16■□□□□ 0.18
CLK3-224ENST00000568605 MVPQ14764 893 aaKnown RBP16.15■□□□□ 0.18
CLK3-224ENST00000568605 LRRC24Q50LG9 513 aa16.15■□□□□ 0.18
CLK3-224ENST00000568605 EAPPQ56P03 285 aaPredicted RBP16.15■□□□□ 0.18
CLK3-224ENST00000568605 LDHDQ86WU2 507 aa16.15■□□□□ 0.18
CLK3-224ENST00000568605 DPF2Q92785 391 aa16.15■□□□□ 0.18
CLK3-224ENST00000568605 SIL1Q9H173 461 aa16.15■□□□□ 0.18
CLK3-224ENST00000568605 COPRSQ9NQ92 184 aa16.15■□□□□ 0.18
CLK3-224ENST00000568605 USP17L3A6NCW0 530 aa16.14■□□□□ 0.17
CLK3-224ENST00000568605 USP17L4A6NCW7 530 aa16.14■□□□□ 0.17
CLK3-224ENST00000568605 PDE8BO95263 885 aa16.14■□□□□ 0.17
CLK3-224ENST00000568605 IL15P40933 162 aaPredicted RBP16.14■□□□□ 0.17
CLK3-224ENST00000568605 PDE3AQ14432 1141 aa16.14■□□□□ 0.17
CLK3-224ENST00000568605 PUM3Q15397 648 aaKnown RBP16.14■□□□□ 0.17
CLK3-224ENST00000568605 USP50Q70EL3 339 aaPredicted RBP16.14■□□□□ 0.17
CLK3-224ENST00000568605 USP17L1Q7RTZ2 530 aa16.14■□□□□ 0.17
CLK3-224ENST00000568605 FBXW7Q969H0 707 aa16.14■□□□□ 0.17
CLK3-224ENST00000568605 ADARB2Q9NS39 739 aaKnown RBP16.14■□□□□ 0.17
CLK3-224ENST00000568605 H7C1D1 291 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 SLC5A1P13866 664 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 KLRK1P26718 216 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 RSBN1LQ6PCB5 846 aaPredicted RBP16.13■□□□□ 0.17
CLK3-224ENST00000568605 TXNRD3Q86VQ6 643 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 VPS37DQ86XT2 251 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 VGLL2Q8N8G2 317 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 AGBL3Q8NEM8 1001 aa16.13■□□□□ 0.17
CLK3-224ENST00000568605 WTIPA6NIX2 430 aaPredicted RBP16.12■□□□□ 0.17
CLK3-224ENST00000568605 ZBTB7BO15156 539 aaPredicted RBP16.12■□□□□ 0.17
CLK3-224ENST00000568605 VIL1P09327 827 aaKnown RBP16.12■□□□□ 0.17
CLK3-224ENST00000568605 IFIT1P09914 478 aaKnown RBP16.12■□□□□ 0.17
CLK3-224ENST00000568605 CAVIN4Q5BKX8 364 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 STRIP1Q5VSL9 837 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 CHADLQ6NUI6 762 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 MICALL2Q8IY33 904 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 CD209Q9NNX6 404 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 CEP126Q9P2H0 1117 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 CLEC11AQ9Y240 323 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 IRS2Q9Y4H2 1338 aa16.12■□□□□ 0.17
CLK3-224ENST00000568605 MAST2Q6P0Q8 1798 aa16.11■□□□□ 0.17
CLK3-224ENST00000568605 EPS15P42566 896 aa16.11■□□□□ 0.17
CLK3-224ENST00000568605 C1orf115Q9H7X2 142 aa16.11■□□□□ 0.17
CLK3-224ENST00000568605 CNOT7Q9UIV1 285 aaKnown RBP16.11■□□□□ 0.17
CLK3-224ENST00000568605 PA2G4Q9UQ80 394 aaKnown RBP16.11■□□□□ 0.17
CLK3-224ENST00000568605 COG6Q9Y2V7 657 aa16.11■□□□□ 0.17
CLK3-224ENST00000568605 ZBTB12Q9Y330 459 aaPredicted RBP16.11■□□□□ 0.17
CLK3-224ENST00000568605 MYH2Q9UKX2 1941 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 SNAP23O00161 211 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 IL1R1P14778 569 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 HIBADHP31937 336 aaKnown RBP16.1■□□□□ 0.17
CLK3-224ENST00000568605 MMP14P50281 582 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 TTLL5Q6EMB2 1281 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 ATG9AQ7Z3C6 839 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 LPIN2Q92539 896 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 KCNQ5Q9NR82 932 aa16.1■□□□□ 0.17
CLK3-224ENST00000568605 PNMA6EA0A0J9YXQ4 647 aa16.09■□□□□ 0.17
CLK3-224ENST00000568605 HSPA6P17066 643 aa16.09■□□□□ 0.17
CLK3-224ENST00000568605 G3BP1Q13283 466 aaKnown RBP eCLIP16.09■□□□□ 0.17
CLK3-224ENST00000568605 ATP2B3Q16720 1220 aa16.09■□□□□ 0.17
CLK3-224ENST00000568605 DACT2Q5SW24 774 aa16.09■□□□□ 0.17
CLK3-224ENST00000568605 OGFOD1Q8N543 542 aa16.09■□□□□ 0.17
CLK3-224ENST00000568605 HDAC9Q9UKV0 1011 aa16.09■□□□□ 0.17
CLK3-224ENST00000568605 HMMRO75330 724 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 FRAT2O75474 233 aaPredicted RBP16.08■□□□□ 0.16
CLK3-224ENST00000568605 USP17L8P0C7I0 530 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 POTEIP0CG38 1075 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 POTEJP0CG39 1038 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 GYG1P46976 350 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 GTF2IP78347 998 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 ATP8B2P98198 1209 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 OS9Q13438 667 aaPredicted RBP16.08■□□□□ 0.16
CLK3-224ENST00000568605 SSH3Q8TE77 659 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 AKAP2Q9Y2D5 859 aa16.08■□□□□ 0.16
CLK3-224ENST00000568605 FGFR2P21802 821 aa16.07■□□□□ 0.16
CLK3-224ENST00000568605 RRP1P56182 461 aaKnown RBP16.07■□□□□ 0.16
CLK3-224ENST00000568605 FKBP1AP62942 108 aaKnown RBP16.07■□□□□ 0.16
CLK3-224ENST00000568605 POLA2Q14181 598 aa16.07■□□□□ 0.16
CLK3-224ENST00000568605 KIF4BQ2VIQ3 1234 aa16.07■□□□□ 0.16
CLK3-224ENST00000568605 CEP85Q6P2H3 762 aa16.07■□□□□ 0.16
CLK3-224ENST00000568605 ZC3H15Q8WU90 426 aaKnown RBP16.07■□□□□ 0.16
CLK3-224ENST00000568605 FAM84BQ96KN1 310 aaPredicted RBP16.07■□□□□ 0.16
CLK3-224ENST00000568605 AKAP11Q9UKA4 1901 aa16.07■□□□□ 0.16
CLK3-224ENST00000568605 MYO5AQ9Y4I1 1855 aaKnown RBP16.06■□□□□ 0.16
CLK3-224ENST00000568605 SASH1O94885 1247 aa16.06■□□□□ 0.16
CLK3-224ENST00000568605 APLP1P51693 650 aa16.06■□□□□ 0.16
CLK3-224ENST00000568605 TDRD7Q8NHU6 1098 aaKnown RBP16.06■□□□□ 0.16
CLK3-224ENST00000568605 GNL3LQ9NVN8 582 aaKnown RBP16.06■□□□□ 0.16
CLK3-224ENST00000568605 MYH7P12883 1935 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms