RNA–Protein interactions for RNA: ENST00000568373.5

SMPD3-211, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,073 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-211ENST00000568373 M0R2C6 588 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 ZSCAN22P10073 491 aaPredicted RBP21.59■■□□□ 1.05
SMPD3-211ENST00000568373 LINC00116Q8NCU8 138 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 BRPF3Q9ULD4 1205 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 LAMB2P55268 1798 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 MYH7P12883 1935 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 MCAMP43121 646 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 PUM3Q15397 648 aaKnown RBP21.59■■□□□ 1.05
SMPD3-211ENST00000568373 PI16Q6UXB8 463 aa21.59■■□□□ 1.05
SMPD3-211ENST00000568373 XRCC6P12956 609 aaKnown RBP eCLIP21.58■■□□□ 1.05
SMPD3-211ENST00000568373 RTL9Q8NET4 1388 aa21.58■■□□□ 1.04
SMPD3-211ENST00000568373 HMGB1P09429 215 aaKnown RBP21.57■■□□□ 1.04
SMPD3-211ENST00000568373 MRE11P49959 708 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 CCDC152Q4G0S7 254 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 CLEC4GQ6UXB4 293 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 GPT2Q8TD30 523 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 LPIN2Q92539 896 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 ARAP2Q8WZ64 1704 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 FGFR2P21802 821 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 WASHC4Q2M389 1173 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 STOX1Q6ZVD7 989 aa21.57■■□□□ 1.04
SMPD3-211ENST00000568373 LAMA4Q16363 1823 aa21.56■■□□□ 1.04
SMPD3-211ENST00000568373 NCLP19338 710 aaKnown RBP21.56■■□□□ 1.04
SMPD3-211ENST00000568373 APPBP2Q92624 585 aa21.56■■□□□ 1.04
SMPD3-211ENST00000568373 CNTNAP4Q9C0A0 1308 aa21.56■■□□□ 1.04
SMPD3-211ENST00000568373 CCDC102BQ68D86 513 aa21.56■■□□□ 1.04
SMPD3-211ENST00000568373 CAVIN1Q6NZI2 390 aaKnown RBP21.56■■□□□ 1.04
SMPD3-211ENST00000568373 MPHOSPH8Q99549 860 aa21.56■■□□□ 1.04
SMPD3-211ENST00000568373 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.56■■□□□ 1.04
SMPD3-211ENST00000568373 SEC31BQ9NQW1 1179 aa21.56■■□□□ 1.04
SMPD3-211ENST00000568373 THSD7AQ9UPZ6 1657 aa21.55■■□□□ 1.04
SMPD3-211ENST00000568373 ARID4AP29374 1257 aaPredicted RBP21.55■■□□□ 1.04
SMPD3-211ENST00000568373 TTF1Q15361 905 aaPredicted RBP21.55■■□□□ 1.04
SMPD3-211ENST00000568373 GAS2L3Q86XJ1 694 aa21.55■■□□□ 1.04
SMPD3-211ENST00000568373 GRPEL1Q9HAV7 217 aa21.55■■□□□ 1.04
SMPD3-211ENST00000568373 F13A1P00488 732 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 UQCRFS1P1P0C7P4 283 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 PHKA1P46020 1223 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 Q6ZUG5 572 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 HELBQ8NG08 1087 aaPredicted RBP21.54■■□□□ 1.04
SMPD3-211ENST00000568373 TCHHQ07283 1943 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 MBD3O95983 291 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 FOXD4L6Q3SYB3 417 aaPredicted RBP21.54■■□□□ 1.04
SMPD3-211ENST00000568373 FOXD4L3Q6VB84 417 aaPredicted RBP21.54■■□□□ 1.04
SMPD3-211ENST00000568373 PTF1AQ7RTS3 328 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 MTMR6Q9Y217 621 aa21.54■■□□□ 1.04
SMPD3-211ENST00000568373 PDIA4P13667 645 aaKnown RBP21.53■■□□□ 1.04
SMPD3-211ENST00000568373 SLC5A1P13866 664 aa21.53■■□□□ 1.04
SMPD3-211ENST00000568373 ZSCAN25Q6NSZ9 544 aa21.53■■□□□ 1.04
SMPD3-211ENST00000568373 DHX32Q7L7V1 743 aaKnown RBP21.53■■□□□ 1.04
SMPD3-211ENST00000568373 ATP6V1DQ9Y5K8 247 aa21.53■■□□□ 1.04
SMPD3-211ENST00000568373 BTAF1O14981 1849 aa21.53■■□□□ 1.04
SMPD3-211ENST00000568373 RGL2O15211 777 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 KCNQ4P56696 695 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 PUS7LQ9H0K6 701 aaKnown RBP21.52■■□□□ 1.04
SMPD3-211ENST00000568373 CTNNA3Q9UI47 895 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 A0A0G2JLW4 131 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 E7EWF7 191 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 FOXP2O15409 715 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 DTNBO60941 627 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 ADD2P35612 726 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 IGHMBP2P38935 993 aaKnown RBP21.52■■□□□ 1.04
SMPD3-211ENST00000568373 ZNF445P59923 1031 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 ZSCAN23Q3MJ62 389 aa21.52■■□□□ 1.04
SMPD3-211ENST00000568373 QTRT2Q9H974 415 aaKnown RBP21.52■■□□□ 1.04
SMPD3-211ENST00000568373 NHSQ6T4R5 1651 aa21.52■■□□□ 1.03
SMPD3-211ENST00000568373 TMEM87AQ8NBN3 555 aa21.51■■□□□ 1.03
SMPD3-211ENST00000568373 GTF3C6Q969F1 213 aa21.51■■□□□ 1.03
SMPD3-211ENST00000568373 SCN7AQ01118 1682 aa21.51■■□□□ 1.03
SMPD3-211ENST00000568373 PDCP20941 246 aa21.51■■□□□ 1.03
SMPD3-211ENST00000568373 STK3Q13188 491 aa21.51■■□□□ 1.03
SMPD3-211ENST00000568373 PIH1D3Q9NQM4 214 aaKnown RBP21.51■■□□□ 1.03
SMPD3-211ENST00000568373 ATRNO75882 1429 aa21.5■■□□□ 1.03
SMPD3-211ENST00000568373 GPAA1O43292 621 aa21.5■■□□□ 1.03
SMPD3-211ENST00000568373 EXOSC10Q01780 885 aaKnown RBP21.5■■□□□ 1.03
SMPD3-211ENST00000568373 SLC9C2Q5TAH2 1124 aa21.5■■□□□ 1.03
SMPD3-211ENST00000568373 RC3H1Q5TC82 1133 aaKnown RBP21.5■■□□□ 1.03
SMPD3-211ENST00000568373 TTLL5Q6EMB2 1281 aa21.5■■□□□ 1.03
SMPD3-211ENST00000568373 ILDR1Q86SU0 546 aaPredicted RBP21.5■■□□□ 1.03
SMPD3-211ENST00000568373 BRF1Q92994 677 aa21.5■■□□□ 1.03
SMPD3-211ENST00000568373 GJD4Q96KN9 370 aaPredicted RBP21.5■■□□□ 1.03
SMPD3-211ENST00000568373 NSFL1CQ9UNZ2 370 aaKnown RBP21.5■■□□□ 1.03
SMPD3-211ENST00000568373 MYO5AQ9Y4I1 1855 aaKnown RBP21.5■■□□□ 1.03
SMPD3-211ENST00000568373 FGD1P98174 961 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 LARP1BQ659C4 914 aaKnown RBP21.49■■□□□ 1.03
SMPD3-211ENST00000568373 USP48Q86UV5 1035 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 LRRC2Q9BYS8 371 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 GDPD2Q9HCC8 539 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 EP400Q96L91 3159 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 UBE3CQ15386 1083 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 AGXT2Q9BYV1 514 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 PANK2Q9BZ23 570 aa21.49■■□□□ 1.03
SMPD3-211ENST00000568373 VPS37CA5D8V6 355 aaPredicted RBP21.48■■□□□ 1.03
SMPD3-211ENST00000568373 IDH1O75874 414 aaKnown RBP21.48■■□□□ 1.03
SMPD3-211ENST00000568373 FGAP02671 866 aa21.48■■□□□ 1.03
SMPD3-211ENST00000568373 IMMTQ16891 758 aaKnown RBP21.48■■□□□ 1.03
SMPD3-211ENST00000568373 ERFEQ4G0M1 354 aa21.48■■□□□ 1.03
SMPD3-211ENST00000568373 RBM27Q9P2N5 1060 aaKnown RBP21.48■■□□□ 1.03
SMPD3-211ENST00000568373 SNAP23O00161 211 aa21.48■■□□□ 1.03
SMPD3-211ENST00000568373 SPATA5Q8NB90 893 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms