RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SCARF1Q14162 830 aa21.87■■□□□ 1.09
CLN3-216ENST00000565316 SULF1Q8IWU6 871 aa21.87■■□□□ 1.09
CLN3-216ENST00000565316 C2orf69Q8N8R5 385 aa21.87■■□□□ 1.09
CLN3-216ENST00000565316 LEMD3Q9Y2U8 911 aa21.87■■□□□ 1.09
CLN3-216ENST00000565316 IGHMBP2P38935 993 aaKnown RBP21.86■■□□□ 1.09
CLN3-216ENST00000565316 EXOSC9Q06265 439 aaKnown RBP21.86■■□□□ 1.09
CLN3-216ENST00000565316 MYOZ2Q9NPC6 264 aa21.86■■□□□ 1.09
CLN3-216ENST00000565316 FAM155AB1AL88 458 aaPredicted RBP21.85■■□□□ 1.09
CLN3-216ENST00000565316 ITGA6P23229 1130 aa21.85■■□□□ 1.09
CLN3-216ENST00000565316 DACT2Q5SW24 774 aa21.85■■□□□ 1.09
CLN3-216ENST00000565316 RGMBQ6NW40 437 aa21.85■■□□□ 1.09
CLN3-216ENST00000565316 ZIC5Q96T25 663 aa21.85■■□□□ 1.09
CLN3-216ENST00000565316 SALL2Q9Y467 1007 aaPredicted RBP21.85■■□□□ 1.09
CLN3-216ENST00000565316 CACNA1FO60840 1977 aa21.85■■□□□ 1.09
CLN3-216ENST00000565316 FAM161AQ3B820 660 aa21.84■■□□□ 1.09
CLN3-216ENST00000565316 ANGEL2Q5VTE6 544 aaKnown RBP21.84■■□□□ 1.09
CLN3-216ENST00000565316 CDCA5Q96FF9 252 aa21.84■■□□□ 1.09
CLN3-216ENST00000565316 ANKRD2Q9GZV1 360 aa21.84■■□□□ 1.09
CLN3-216ENST00000565316 COA1Q9GZY4 146 aa21.84■■□□□ 1.09
CLN3-216ENST00000565316 SPINK5Q9NQ38 1064 aaPredicted RBP21.84■■□□□ 1.09
CLN3-216ENST00000565316 TSKSQ9UJT2 592 aa21.84■■□□□ 1.09
CLN3-216ENST00000565316 PITPNM2Q9BZ72 1349 aa21.84■■□□□ 1.09
CLN3-216ENST00000565316 TXNRD3Q86VQ6 643 aa21.83■■□□□ 1.09
CLN3-216ENST00000565316 CCDC102AQ96A19 550 aa21.83■■□□□ 1.09
CLN3-216ENST00000565316 ABHD8Q96I13 439 aa21.83■■□□□ 1.09
CLN3-216ENST00000565316 ZNF804BA4D1E1 1349 aa21.82■■□□□ 1.08
CLN3-216ENST00000565316 BEND3Q5T5X7 828 aa21.82■■□□□ 1.08
CLN3-216ENST00000565316 STRIP1Q5VSL9 837 aa21.82■■□□□ 1.08
CLN3-216ENST00000565316 SPEF2Q9C093 1822 aa21.82■■□□□ 1.08
CLN3-216ENST00000565316 MYO3BQ8WXR4 1341 aa21.82■■□□□ 1.08
CLN3-216ENST00000565316 MPHOSPH8Q99549 860 aa21.81■■□□□ 1.08
CLN3-216ENST00000565316 MMP14P50281 582 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 FOXO4P98177 505 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 MXD3Q9BW11 206 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 ZNF646O15015 1829 aaPredicted RBP21.8■■□□□ 1.08
CLN3-216ENST00000565316 ANKRD18BA2A2Z9 1011 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 F6X3S4 739 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 KLRK1P26718 216 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 ZNF157P51786 506 aaPredicted RBP21.8■■□□□ 1.08
CLN3-216ENST00000565316 FKBP1BP68106 108 aa21.8■■□□□ 1.08
CLN3-216ENST00000565316 SLC10A3P09131 477 aa21.79■■□□□ 1.08
CLN3-216ENST00000565316 CHRNDQ07001 517 aa21.79■■□□□ 1.08
CLN3-216ENST00000565316 NBPF9Q3BBW0 867 aa21.79■■□□□ 1.08
CLN3-216ENST00000565316 IRS2Q9Y4H2 1338 aa21.78■■□□□ 1.08
CLN3-216ENST00000565316 KIF23Q02241 960 aaPredicted RBP21.78■■□□□ 1.08
CLN3-216ENST00000565316 C15orf52Q6ZUT6 534 aaKnown RBP21.78■■□□□ 1.08
CLN3-216ENST00000565316 OGFOD1Q8N543 542 aa21.78■■□□□ 1.08
CLN3-216ENST00000565316 IFIT5Q13325 482 aaKnown RBP21.77■■□□□ 1.07
CLN3-216ENST00000565316 TTLL5Q6EMB2 1281 aa21.77■■□□□ 1.07
CLN3-216ENST00000565316 SAGE1Q9NXZ1 904 aa21.77■■□□□ 1.07
CLN3-216ENST00000565316 WNT10BO00744 389 aa21.76■■□□□ 1.07
CLN3-216ENST00000565316 FAM9BQ8IZU0 186 aa21.76■■□□□ 1.07
CLN3-216ENST00000565316 FBXW7Q969H0 707 aa21.76■■□□□ 1.07
CLN3-216ENST00000565316 KCNJ4P48050 445 aa21.75■■□□□ 1.07
CLN3-216ENST00000565316 EPHA10Q5JZY3 1008 aa21.75■■□□□ 1.07
CLN3-216ENST00000565316 ZBED3Q96IU2 234 aaPredicted RBP21.75■■□□□ 1.07
CLN3-216ENST00000565316 CD209Q9NNX6 404 aa21.75■■□□□ 1.07
CLN3-216ENST00000565316 ZNF521Q96K83 1311 aa21.74■■□□□ 1.07
CLN3-216ENST00000565316 PAPPA2Q9BXP8 1791 aa21.74■■□□□ 1.07
CLN3-216ENST00000565316 GRM8O00222 908 aa21.74■■□□□ 1.07
CLN3-216ENST00000565316 LMBR1LQ6UX01 489 aa21.74■■□□□ 1.07
CLN3-216ENST00000565316 RASAL3Q86YV0 1011 aa21.74■■□□□ 1.07
CLN3-216ENST00000565316 CSRNP1Q96S65 589 aa21.74■■□□□ 1.07
CLN3-216ENST00000565316 SCAF8Q9UPN6 1271 aaKnown RBP21.74■■□□□ 1.07
CLN3-216ENST00000565316 SNAP23O00161 211 aa21.73■■□□□ 1.07
CLN3-216ENST00000565316 TAF5LO75529 589 aa21.73■■□□□ 1.07
CLN3-216ENST00000565316 ALDH1L1O75891 902 aa21.73■■□□□ 1.07
CLN3-216ENST00000565316 GTF2IP78347 998 aa21.73■■□□□ 1.07
CLN3-216ENST00000565316 REM2Q8IYK8 340 aaPredicted RBP21.73■■□□□ 1.07
CLN3-216ENST00000565316 RNF186Q9NXI6 227 aa21.73■■□□□ 1.07
CLN3-216ENST00000565316 KIAA0825Q8IV33 1275 aa21.72■■□□□ 1.07
CLN3-216ENST00000565316 HELBQ8NG08 1087 aaPredicted RBP21.72■■□□□ 1.07
CLN3-216ENST00000565316 MCOLN1Q9GZU1 580 aa21.72■■□□□ 1.07
CLN3-216ENST00000565316 CASP8AP2Q9UKL3 1982 aa21.71■■□□□ 1.07
CLN3-216ENST00000565316 IL1R1P14778 569 aa21.71■■□□□ 1.07
CLN3-216ENST00000565316 PRAMEF18Q5VWM3 479 aa21.71■■□□□ 1.07
CLN3-216ENST00000565316 HDAC9Q9UKV0 1011 aa21.71■■□□□ 1.07
CLN3-216ENST00000565316 CHMP3Q9Y3E7 222 aa21.71■■□□□ 1.07
CLN3-216ENST00000565316 SASH1O94885 1247 aa21.7■■□□□ 1.06
CLN3-216ENST00000565316 CCDC57Q2TAC2 916 aa21.7■■□□□ 1.06
CLN3-216ENST00000565316 MOB2Q70IA6 237 aa21.7■■□□□ 1.06
CLN3-216ENST00000565316 SRCIN1Q9C0H9 1055 aa21.7■■□□□ 1.06
CLN3-216ENST00000565316 C9orf78Q9NZ63 289 aaPredicted RBP21.7■■□□□ 1.06
CLN3-216ENST00000565316 UBE2Q2LH0YL09 131 aa21.69■■□□□ 1.06
CLN3-216ENST00000565316 TRPA1O75762 1119 aa21.69■■□□□ 1.06
CLN3-216ENST00000565316 ZNF804AQ7Z570 1209 aa21.69■■□□□ 1.06
CLN3-216ENST00000565316 CERS5Q8N5B7 392 aa21.69■■□□□ 1.06
CLN3-216ENST00000565316 MTMR14Q8NCE2 650 aa21.69■■□□□ 1.06
CLN3-216ENST00000565316 ZNF594Q96JF6 807 aaPredicted RBP21.69■■□□□ 1.06
CLN3-216ENST00000565316 LDHAL6AQ6ZMR3 332 aa21.68■■□□□ 1.06
CLN3-216ENST00000565316 APOBEC3FQ8IUX4 373 aaKnown RBP21.68■■□□□ 1.06
CLN3-216ENST00000565316 A0A1B0GUL6 1792 aa21.68■■□□□ 1.06
CLN3-216ENST00000565316 CCDC85CA6NKD9 419 aa21.67■■□□□ 1.06
CLN3-216ENST00000565316 NF2P35240 595 aa21.67■■□□□ 1.06
CLN3-216ENST00000565316 FKBP1AP62942 108 aaKnown RBP21.67■■□□□ 1.06
CLN3-216ENST00000565316 DGKZQ13574 1117 aa21.67■■□□□ 1.06
CLN3-216ENST00000565316 SLC4A10Q6U841 1118 aa21.67■■□□□ 1.06
CLN3-216ENST00000565316 KAZALD1Q96I82 304 aa21.67■■□□□ 1.06
CLN3-216ENST00000565316 UTYO14607 1347 aa21.67■■□□□ 1.06
CLN3-216ENST00000565316 RGS19P49795 217 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms