RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 PAG1Q9NWQ8 432 aa12.48□□□□□ -0.41
USP3-219ENST00000561326 XDHP47989 1333 aa12.47□□□□□ -0.41
USP3-219ENST00000561326 ARID4AP29374 1257 aaPredicted RBP12.47□□□□□ -0.41
USP3-219ENST00000561326 ANP32AP39687 249 aaKnown RBP12.47□□□□□ -0.41
USP3-219ENST00000561326 STYK1Q6J9G0 422 aa12.47□□□□□ -0.41
USP3-219ENST00000561326 KIAA1211Q6ZU35 1233 aa12.47□□□□□ -0.41
USP3-219ENST00000561326 SP8Q8IXZ3 490 aa12.47□□□□□ -0.41
USP3-219ENST00000561326 ZNF622Q969S3 477 aaKnown RBP eCLIP12.47□□□□□ -0.41
USP3-219ENST00000561326 ZNF804BA4D1E1 1349 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 GOLIM4O00461 696 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 PPEF1O14829 653 aaPredicted RBP12.46□□□□□ -0.41
USP3-219ENST00000561326 ATP2B4P23634 1241 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 ZSCAN25Q6NSZ9 544 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 KBTBD3Q8NAB2 608 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 CNKSR1Q969H4 720 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 ESYT1Q9BSJ8 1104 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 C22orf23Q9BZE7 217 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 PDGFDQ9GZP0 370 aaPredicted RBP12.46□□□□□ -0.41
USP3-219ENST00000561326 MTFR1LQ9H019 292 aa12.46□□□□□ -0.41
USP3-219ENST00000561326 NSFL1CQ9UNZ2 370 aaKnown RBP12.46□□□□□ -0.41
USP3-219ENST00000561326 MYO5AQ9Y4I1 1855 aaKnown RBP12.46□□□□□ -0.42
USP3-219ENST00000561326 SEMA3EO15041 775 aa12.45□□□□□ -0.42
USP3-219ENST00000561326 EPB41L2O43491 1005 aaKnown RBP12.45□□□□□ -0.42
USP3-219ENST00000561326 ZFYP08048 801 aaPredicted RBP12.45□□□□□ -0.42
USP3-219ENST00000561326 PHKA1P46020 1223 aa12.45□□□□□ -0.42
USP3-219ENST00000561326 BCAMP50895 628 aa12.45□□□□□ -0.42
USP3-219ENST00000561326 CWC27Q6UX04 472 aaKnown RBP12.45□□□□□ -0.42
USP3-219ENST00000561326 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.45□□□□□ -0.421e-6■■■□□ 15.4
USP3-219ENST00000561326 GGA1Q9UJY5 639 aa12.45□□□□□ -0.42
USP3-219ENST00000561326 ATP6V0A2Q9Y487 856 aa12.45□□□□□ -0.42
USP3-219ENST00000561326 COL4A1P02462 1669 aa12.45□□□□□ -0.42
USP3-219ENST00000561326 RFX7Q2KHR2 1363 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 SNAP23O00161 211 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 FRAT2O75474 233 aaPredicted RBP12.44□□□□□ -0.42
USP3-219ENST00000561326 HIBADHP31937 336 aaKnown RBP12.44□□□□□ -0.42
USP3-219ENST00000561326 MCAMP43121 646 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 R3HDM1Q15032 1099 aaKnown RBP12.44□□□□□ -0.42
USP3-219ENST00000561326 C15orf52Q6ZUT6 534 aaKnown RBP12.44□□□□□ -0.42
USP3-219ENST00000561326 FBXO33Q7Z6M2 555 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 SPATA5Q8NB90 893 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 TBC1D32Q96NH3 1257 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 SNRKQ9NRH2 765 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 PODXL2Q9NZ53 605 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 CCDC88AQ3V6T2 1871 aa12.44□□□□□ -0.42
USP3-219ENST00000561326 CHD4Q14839 1912 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 SGSM2O43147 1006 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 ZBTB7AO95365 584 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 MCCP23508 829 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 ZAP70P43403 619 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 GYG1P46976 350 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 WASHC4Q2M389 1173 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 GRIPAP1Q4V328 841 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 CC2D2BQ6DHV5 1058 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 ZNF804AQ7Z570 1209 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 EDC3Q96F86 508 aaKnown RBP12.43□□□□□ -0.42
USP3-219ENST00000561326 FAM84BQ96KN1 310 aaPredicted RBP12.43□□□□□ -0.42
USP3-219ENST00000561326 USP26Q9BXU7 913 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 DENND2AQ9ULE3 1009 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 ATF5Q9Y2D1 282 aaPredicted RBP12.43□□□□□ -0.42
USP3-219ENST00000561326 SLX4Q8IY92 1834 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 KIF13BQ9NQT8 1826 aa12.43□□□□□ -0.42
USP3-219ENST00000561326 LRRC37AA6NMS7 1700 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 COL11A2P13942 1736 aaPredicted RBP12.42□□□□□ -0.42
USP3-219ENST00000561326 RAD50Q92878 1312 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 C6orf229H3BNL8 230 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 ZBTB22O15209 634 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 RNF113AO15541 343 aaKnown RBP12.42□□□□□ -0.42
USP3-219ENST00000561326 UFL1O94874 794 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 GPSM2P81274 684 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 SCARF1Q14162 830 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 MPNDQ8N594 471 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 ANO2Q9NQ90 1003 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 HELLSQ9NRZ9 838 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 HMG20BQ9P0W2 317 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 NDUFB9Q9Y6M9 179 aa12.42□□□□□ -0.42
USP3-219ENST00000561326 DLEC1Q9Y238 1755 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 CYP2E1P05181 493 aaPredicted RBP12.41□□□□□ -0.42
USP3-219ENST00000561326 RBM25P49756 843 aaKnown RBP12.41□□□□□ -0.42
USP3-219ENST00000561326 TGFB2P61812 414 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 MAP3K12Q12852 859 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 NMIQ13287 307 aaPredicted RBP12.41□□□□□ -0.42
USP3-219ENST00000561326 RASGRF1Q13972 1273 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 MCMDC2Q4G0Z9 681 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 DDRGK1Q96HY6 314 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 ANTXR1Q9H6X2 564 aa12.41□□□□□ -0.42
USP3-219ENST00000561326 PDS5AQ29RF7 1337 aaKnown RBP12.4□□□□□ -0.42
USP3-219ENST00000561326 C10orf71Q711Q0 1435 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 DOCK2Q92608 1830 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 IGSF3O75054 1194 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 CHRNA5P30532 468 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 SPTY2D1Q68D10 685 aaPredicted RBP12.4□□□□□ -0.42
USP3-219ENST00000561326 PRPF40BQ6NWY9 871 aaKnown RBP12.4□□□□□ -0.42
USP3-219ENST00000561326 DPP8Q6V1X1 898 aaPredicted RBP12.4□□□□□ -0.42
USP3-219ENST00000561326 TTLL6Q8N841 843 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 TBC1D16Q8TBP0 767 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 EYA3Q99504 573 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 ZC3H12CQ9C0D7 883 aaKnown RBP12.4□□□□□ -0.42
USP3-219ENST00000561326 LRP2BPQ9P2M1 347 aa12.4□□□□□ -0.42
USP3-219ENST00000561326 WTIPA6NIX2 430 aaPredicted RBP12.39□□□□□ -0.43
USP3-219ENST00000561326 G3V3G9 751 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms