RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 MAP2K2P36507 400 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 HHIPL1Q96JK4 782 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 ZIC5Q96T25 663 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 CDC5LQ99459 802 aaKnown RBP14.92□□□□□ -0.02
USP3-214ENST00000559718 BEGAINQ9BUH8 593 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 MINPP1Q9UNW1 487 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 SPEF2Q9C093 1822 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 FANCIQ9NVI1 1328 aa14.92□□□□□ -0.02
USP3-214ENST00000559718 ATP2B4P23634 1241 aa14.91□□□□□ -0.02
USP3-214ENST00000559718 FLIIQ13045 1269 aa14.91□□□□□ -0.02
USP3-214ENST00000559718 RSBN1LQ6PCB5 846 aaPredicted RBP14.91□□□□□ -0.02
USP3-214ENST00000559718 DCPSQ96C86 337 aaKnown RBP14.91□□□□□ -0.02
USP3-214ENST00000559718 BSDC1Q9NW68 430 aaPredicted RBP14.91□□□□□ -0.02
USP3-214ENST00000559718 GGA3Q9NZ52 723 aa14.91□□□□□ -0.02
USP3-214ENST00000559718 MYH3P11055 1940 aa14.91□□□□□ -0.02
USP3-214ENST00000559718 CASP7P55210 303 aa14.9□□□□□ -0.02
USP3-214ENST00000559718 HUNKP57058 714 aa14.9□□□□□ -0.02
USP3-214ENST00000559718 GCKRQ14397 625 aa14.9□□□□□ -0.02
USP3-214ENST00000559718 GMLQ99445 158 aa14.9□□□□□ -0.02
USP3-214ENST00000559718 ANP32CO43423 234 aa14.89□□□□□ -0.03
USP3-214ENST00000559718 VAMP4O75379 141 aa14.89□□□□□ -0.03
USP3-214ENST00000559718 ZNF280AP59817 542 aaPredicted RBP14.89□□□□□ -0.03
USP3-214ENST00000559718 FKBP5Q13451 457 aaPredicted RBP14.89□□□□□ -0.03
USP3-214ENST00000559718 AGBL3Q8NEM8 1001 aa14.89□□□□□ -0.03
USP3-214ENST00000559718 MXD3Q9BW11 206 aa14.89□□□□□ -0.03
USP3-214ENST00000559718 GBA2Q9HCG7 927 aaPredicted RBP14.89□□□□□ -0.03
USP3-214ENST00000559718 PSME4Q14997 1843 aa14.89□□□□□ -0.03
USP3-214ENST00000559718 USP17L3A6NCW0 530 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 USP17L4A6NCW7 530 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 CCT4P50991 539 aaKnown RBP14.88□□□□□ -0.03
USP3-214ENST00000559718 EXOSC9Q06265 439 aaKnown RBP14.88□□□□□ -0.03
USP3-214ENST00000559718 SCARF1Q14162 830 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 FAM161AQ3B820 660 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 USP17L1Q7RTZ2 530 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 PODNQ7Z5L7 613 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 TXNRD3Q86VQ6 643 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 DNAAF4Q8WXU2 420 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 PLA2G12BQ9BX93 195 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 SCAF8Q9UPN6 1271 aaKnown RBP14.88□□□□□ -0.03
USP3-214ENST00000559718 ZNF609O15014 1411 aa14.88□□□□□ -0.03
USP3-214ENST00000559718 MED23Q9ULK4 1368 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 FAM155AB1AL88 458 aaPredicted RBP14.87□□□□□ -0.03
USP3-214ENST00000559718 USP17L8P0C7I0 530 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 ITGA6P23229 1130 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 KLRK1P26718 216 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 BRPF1P55201 1214 aaPredicted RBP14.87□□□□□ -0.03
USP3-214ENST00000559718 ANGEL2Q5VTE6 544 aaKnown RBP14.87□□□□□ -0.03
USP3-214ENST00000559718 RGMBQ6NW40 437 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 WDR63Q8IWG1 891 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 SULF1Q8IWU6 871 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 C2orf69Q8N8R5 385 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 ABHD8Q96I13 439 aa14.87□□□□□ -0.03
USP3-214ENST00000559718 ZNF316A6NFI3 1004 aaPredicted RBP14.86□□□□□ -0.03
USP3-214ENST00000559718 F6X3S4 739 aa14.86□□□□□ -0.03
USP3-214ENST00000559718 IGHMBP2P38935 993 aaKnown RBP14.86□□□□□ -0.03
USP3-214ENST00000559718 NOGQ13253 232 aa14.86□□□□□ -0.03
USP3-214ENST00000559718 LINS1Q8NG48 757 aa14.86□□□□□ -0.03
USP3-214ENST00000559718 CDCA5Q96FF9 252 aa14.86□□□□□ -0.03
USP3-214ENST00000559718 MYOZ2Q9NPC6 264 aa14.86□□□□□ -0.03
USP3-214ENST00000559718 CSF1RP07333 972 aa14.85□□□□□ -0.03
USP3-214ENST00000559718 DACT2Q5SW24 774 aa14.85□□□□□ -0.03
USP3-214ENST00000559718 FBXW7Q969H0 707 aa14.85□□□□□ -0.03
USP3-214ENST00000559718 MYH16Q9H6N6 1097 aa14.85□□□□□ -0.03
USP3-214ENST00000559718 CASP8AP2Q9UKL3 1982 aa14.85□□□□□ -0.03
USP3-214ENST00000559718 CA12O43570 354 aa14.84□□□□□ -0.03
USP3-214ENST00000559718 ZNF157P51786 506 aaPredicted RBP14.84□□□□□ -0.03
USP3-214ENST00000559718 COA1Q9GZY4 146 aa14.84□□□□□ -0.03
USP3-214ENST00000559718 LEMD3Q9Y2U8 911 aa14.84□□□□□ -0.03
USP3-214ENST00000559718 ZNF646O15015 1829 aaPredicted RBP14.84□□□□□ -0.03
USP3-214ENST00000559718 ZNF804BA4D1E1 1349 aa14.84□□□□□ -0.03
USP3-214ENST00000559718 CACNA1FO60840 1977 aa14.84□□□□□ -0.03
USP3-214ENST00000559718 SNAP23O00161 211 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 ZEB1P37275 1124 aaPredicted RBP14.83□□□□□ -0.04
USP3-214ENST00000559718 FOXO4P98177 505 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 KIF23Q02241 960 aaPredicted RBP14.83□□□□□ -0.04
USP3-214ENST00000559718 NBPF9Q3BBW0 867 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 BEND3Q5T5X7 828 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 PRAMEF18Q5VWM3 479 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 FAM9BQ8IZU0 186 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 MPHOSPH8Q99549 860 aa14.83□□□□□ -0.04
USP3-214ENST00000559718 FARP1Q9Y4F1 1045 aaPredicted RBP14.83□□□□□ -0.04
USP3-214ENST00000559718 CHRNDQ07001 517 aa14.82□□□□□ -0.04
USP3-214ENST00000559718 STRIP1Q5VSL9 837 aa14.82□□□□□ -0.04
USP3-214ENST00000559718 MOB2Q70IA6 237 aa14.82□□□□□ -0.04
USP3-214ENST00000559718 HELBQ8NG08 1087 aaPredicted RBP14.82□□□□□ -0.04
USP3-214ENST00000559718 CCDC102AQ96A19 550 aa14.82□□□□□ -0.04
USP3-214ENST00000559718 ANKRD2Q9GZV1 360 aa14.82□□□□□ -0.04
USP3-214ENST00000559718 ANKRD18BA2A2Z9 1011 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 WNT10BO00744 389 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 TAF5LO75529 589 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 SLC10A3P09131 477 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 EPHA10Q5JZY3 1008 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 TTLL5Q6EMB2 1281 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 CHMP3Q9Y3E7 222 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 PITPNM2Q9BZ72 1349 aa14.81□□□□□ -0.04
USP3-214ENST00000559718 SASH1O94885 1247 aa14.8□□□□□ -0.04
USP3-214ENST00000559718 KCNJ4P48050 445 aa14.8□□□□□ -0.04
USP3-214ENST00000559718 GTF2IP78347 998 aa14.8□□□□□ -0.04
USP3-214ENST00000559718 KIAA0825Q8IV33 1275 aa14.8□□□□□ -0.04
USP3-214ENST00000559718 OGFOD1Q8N543 542 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms