RNA–Protein interactions for RNA: ENST00000555405.5

NEK9-205, Transcript of NIMA related kinase 9, humanhuman

TSL 1 (best)

Gene NEK9, Length 3,357 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK9-205ENST00000555405 BCS1LQ9Y276 419 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 UBR3Q6ZT12 1888 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 BBOX1O75936 387 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 MCAMP43121 646 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 PRPF40BQ6NWY9 871 aaKnown RBP12.35□□□□□ -0.43
NEK9-205ENST00000555405 CCDC129Q6ZRS4 1044 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 MPNDQ8N594 471 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 MTFR1LQ9H019 292 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 RAI14Q9P0K7 980 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 SALL3Q9BXA9 1300 aa12.35□□□□□ -0.43
NEK9-205ENST00000555405 HIBADHP31937 336 aaKnown RBP12.34□□□□□ -0.43
NEK9-205ENST00000555405 SLC16A10Q8TF71 515 aa12.34□□□□□ -0.43
NEK9-205ENST00000555405 EVI5LQ96CN4 794 aa12.34□□□□□ -0.43
NEK9-205ENST00000555405 RGL2O15211 777 aa12.34□□□□□ -0.43
NEK9-205ENST00000555405 CHMLP26374 656 aa12.34□□□□□ -0.43
NEK9-205ENST00000555405 VGLL2Q8N8G2 317 aa12.34□□□□□ -0.43
NEK9-205ENST00000555405 GNL3LQ9NVN8 582 aaKnown RBP12.34□□□□□ -0.43
NEK9-205ENST00000555405 F8W031 263 aaPredicted RBP12.33□□□□□ -0.43
NEK9-205ENST00000555405 ANP32AP39687 249 aaKnown RBP12.33□□□□□ -0.43
NEK9-205ENST00000555405 SLC4A3P48751 1232 aa12.33□□□□□ -0.43
NEK9-205ENST00000555405 ZC3H12CQ9C0D7 883 aaKnown RBP12.33□□□□□ -0.43
NEK9-205ENST00000555405 NMIQ13287 307 aaPredicted RBP12.33□□□□□ -0.44
NEK9-205ENST00000555405 RASGRF1Q13972 1273 aa12.33□□□□□ -0.44
NEK9-205ENST00000555405 GPR108Q9NPR9 543 aa12.33□□□□□ -0.44
NEK9-205ENST00000555405 UBE4AQ14139 1066 aa12.33□□□□□ -0.44
NEK9-205ENST00000555405 STK11IPQ8N1F8 1099 aa12.33□□□□□ -0.44
NEK9-205ENST00000555405 FAM84BQ96KN1 310 aaPredicted RBP12.33□□□□□ -0.44
NEK9-205ENST00000555405 HMG20BQ9P0W2 317 aa12.33□□□□□ -0.44
NEK9-205ENST00000555405 CRY2Q49AN0 593 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 C22orf23Q9BZE7 217 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 RIC1Q4ADV7 1423 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 XDHP47989 1333 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 TNS1Q9HBL0 1735 aaKnown RBP12.32□□□□□ -0.44
NEK9-205ENST00000555405 APPP05067 770 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 SLC9C2Q5TAH2 1124 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 SPATA5Q8NB90 893 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 SPRYD3Q8NCJ5 442 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 CRAMP1Q96RY5 1269 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 HAUS7Q99871 368 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 IL25Q9H293 177 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 DBNDD1Q9H9R9 158 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 POLLQ9UGP5 575 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 TTLL6Q8N841 843 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 CNKSR1Q969H4 720 aa12.32□□□□□ -0.44
NEK9-205ENST00000555405 DAXXQ9UER7 740 aaPredicted RBP12.32□□□□□ -0.44
NEK9-205ENST00000555405 FGFR2P21802 821 aa12.31□□□□□ -0.44
NEK9-205ENST00000555405 NOL8Q76FK4 1167 aaKnown RBP12.31□□□□□ -0.44
NEK9-205ENST00000555405 C4AP0C0L4 1744 aa12.31□□□□□ -0.44
NEK9-205ENST00000555405 UQCRFS1P1P0C7P4 283 aa12.31□□□□□ -0.44
NEK9-205ENST00000555405 A0A0D9SFI3 127 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 CYP2E1P05181 493 aaPredicted RBP12.3□□□□□ -0.44
NEK9-205ENST00000555405 MIGA1Q8NAN2 632 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 TBC1D16Q8TBP0 767 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 ESYT1Q9BSJ8 1104 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 SPON1Q9HCB6 807 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 PIH1D3Q9NQM4 214 aaKnown RBP12.3□□□□□ -0.44
NEK9-205ENST00000555405 RUFY2Q8WXA3 655 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 ZNF609O15014 1411 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 ANKRD36CQ5JPF3 1778 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 SLC4A8Q2Y0W8 1093 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 MAGEB6Q8N7X4 407 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 ATP6V0A2Q9Y487 856 aa12.3□□□□□ -0.44
NEK9-205ENST00000555405 COL4A1P02462 1669 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 HOXA10P31260 410 aaPredicted RBP12.29□□□□□ -0.44
NEK9-205ENST00000555405 GTF2IP78347 998 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 KBTBD3Q8NAB2 608 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 REC8O95072 547 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 ATP2B4P23634 1241 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 SP8Q8IXZ3 490 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 MXD3Q9BW11 206 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 RREB1Q92766 1687 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 ZNF804AQ7Z570 1209 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 NLGN2Q8NFZ4 835 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 PIM2Q9P1W9 311 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 LEMD3Q9Y2U8 911 aa12.29□□□□□ -0.44
NEK9-205ENST00000555405 AOX1Q06278 1338 aa12.28□□□□□ -0.44
NEK9-205ENST00000555405 RTL9Q8NET4 1388 aa12.28□□□□□ -0.44
NEK9-205ENST00000555405 AOC3Q16853 763 aa12.28□□□□□ -0.44
NEK9-205ENST00000555405 ZNF589Q86UQ0 364 aaPredicted RBP12.28□□□□□ -0.44
NEK9-205ENST00000555405 ZNF277Q9NRM2 450 aaPredicted RBP12.28□□□□□ -0.44
NEK9-205ENST00000555405 MAP3K12Q12852 859 aa12.28□□□□□ -0.44
NEK9-205ENST00000555405 SCN7AQ01118 1682 aa12.28□□□□□ -0.44
NEK9-205ENST00000555405 CICQ96RK0 1608 aaPredicted RBP12.27□□□□□ -0.44
NEK9-205ENST00000555405 PPIP5K2O43314 1243 aa12.27□□□□□ -0.44
NEK9-205ENST00000555405 CYP7A1P22680 504 aa12.27□□□□□ -0.44
NEK9-205ENST00000555405 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.27□□□□□ -0.44
NEK9-205ENST00000555405 KCNQ5Q9NR82 932 aa12.27□□□□□ -0.44
NEK9-205ENST00000555405 ZNF831Q5JPB2 1677 aa12.27□□□□□ -0.44
NEK9-205ENST00000555405 PRDX5P30044 214 aa12.27□□□□□ -0.45
NEK9-205ENST00000555405 PTH1RQ03431 593 aa12.27□□□□□ -0.45
NEK9-205ENST00000555405 RNF113AO15541 343 aaKnown RBP12.27□□□□□ -0.45
NEK9-205ENST00000555405 CD209Q9NNX6 404 aa12.27□□□□□ -0.45
NEK9-205ENST00000555405 ZNF532Q9HCE3 1301 aa12.27□□□□□ -0.45
NEK9-205ENST00000555405 MYH3P11055 1940 aa12.26□□□□□ -0.45
NEK9-205ENST00000555405 BCORQ6W2J9 1755 aa12.26□□□□□ -0.45
NEK9-205ENST00000555405 N4BP2Q86UW6 1770 aaPredicted RBP12.26□□□□□ -0.45
NEK9-205ENST00000555405 DALRD3Q5D0E6 543 aaKnown RBP12.26□□□□□ -0.45
NEK9-205ENST00000555405 DZIP1Q86YF9 867 aaKnown RBP12.26□□□□□ -0.45
NEK9-205ENST00000555405 LARGE2Q8N3Y3 721 aa12.26□□□□□ -0.45
NEK9-205ENST00000555405 HAND2P61296 217 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms