RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, human

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-215	ENST00000545608	VIL1	P09327	827 aa	Known RBP	10.88	□□□□□ -0.67
USP28-215	ENST00000545608	RPS12	P25398	132 aa	Known RBP	10.88	□□□□□ -0.67
USP28-215	ENST00000545608	CWF19L2	Q2TBE0	894 aa	Known RBP	10.88	□□□□□ -0.67
USP28-215	ENST00000545608	TWISTNB	Q3B726	338 aa	Predicted RBP	10.88	□□□□□ -0.67
USP28-215	ENST00000545608	ANKRD18A	Q8IVF6	992 aa		10.88	□□□□□ -0.67
USP28-215	ENST00000545608	GGA1	Q9UJY5	639 aa		10.88	□□□□□ -0.67
USP28-215	ENST00000545608		G3V3G9	751 aa		10.87	□□□□□ -0.67
USP28-215	ENST00000545608	MAP2K2	P36507	400 aa		10.87	□□□□□ -0.67
USP28-215	ENST00000545608	CTSW	P56202	376 aa		10.87	□□□□□ -0.67
USP28-215	ENST00000545608	PDAP1	Q13442	181 aa	Known RBP	10.87	□□□□□ -0.67
USP28-215	ENST00000545608	TTLL11	Q8NHH1	800 aa		10.87	□□□□□ -0.67
USP28-215	ENST00000545608	STK31	Q9BXU1	1019 aa		10.87	□□□□□ -0.67
USP28-215	ENST00000545608	PCNT	O95613	3336 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	NEURL1B	A8MQ27	555 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	ADM5	C9JUS6	153 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608		H7C1W4	665 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	ATP2B4	P23634	1241 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	NEXN	Q0ZGT2	675 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	KRT26	Q7Z3Y9	468 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	HHIPL1	Q96JK4	782 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	GREM2	Q9H772	168 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	TSKS	Q9UJT2	592 aa		10.86	□□□□□ -0.67
USP28-215	ENST00000545608	SALL2	Q9Y467	1007 aa	Predicted RBP	10.86	□□□□□ -0.67
USP28-215	ENST00000545608	ASTN2	O75129	1339 aa	Predicted RBP	10.85	□□□□□ -0.67
USP28-215	ENST00000545608	XDH	P47989	1333 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	IL16	Q14005	1332 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	KIF4B	Q2VIQ3	1234 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	RSBN1L	Q6PCB5	846 aa	Predicted RBP	10.85	□□□□□ -0.67
USP28-215	ENST00000545608	DCPS	Q96C86	337 aa	Known RBP	10.85	□□□□□ -0.67
USP28-215	ENST00000545608	ZIC5	Q96T25	663 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	CDC5L	Q99459	802 aa	Known RBP	10.85	□□□□□ -0.67
USP28-215	ENST00000545608	BEGAIN	Q9BUH8	593 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	MRS2	Q9HD23	443 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	BSDC1	Q9NW68	430 aa	Predicted RBP	10.85	□□□□□ -0.67
USP28-215	ENST00000545608	MINPP1	Q9UNW1	487 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	TRPM7	Q96QT4	1865 aa		10.85	□□□□□ -0.67
USP28-215	ENST00000545608	VAMP4	O75379	141 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	HUNK	P57058	714 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	ZNF280A	P59817	542 aa	Predicted RBP	10.84	□□□□□ -0.67
USP28-215	ENST00000545608	FLII	Q13045	1269 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	UBE3B	Q7Z3V4	1068 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	AGBL3	Q8NEM8	1001 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	GML	Q99445	158 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	GBA2	Q9HCG7	927 aa	Predicted RBP	10.84	□□□□□ -0.67
USP28-215	ENST00000545608	FANCI	Q9NVI1	1328 aa		10.84	□□□□□ -0.67
USP28-215	ENST00000545608	CASP7	P55210	303 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	SCARF1	Q14162	830 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	GCKR	Q14397	625 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	PODN	Q7Z5L7	613 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	DNAAF4	Q8WXU2	420 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	GGA3	Q9NZ52	723 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	THSD7B	Q9C0I4	1608 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	SCN9A	Q15858	1988 aa		10.83	□□□□□ -0.68
USP28-215	ENST00000545608	USP17L3	A6NCW0	530 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	USP17L4	A6NCW7	530 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	ANP32C	O43423	234 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	CSF1R	P07333	972 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	USP17L8	P0C7I0	530 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	CCT4	P50991	539 aa	Known RBP	10.82	□□□□□ -0.68
USP28-215	ENST00000545608	BRPF1	P55201	1214 aa	Predicted RBP	10.82	□□□□□ -0.68
USP28-215	ENST00000545608	EXOSC9	Q06265	439 aa	Known RBP	10.82	□□□□□ -0.68
USP28-215	ENST00000545608	FKBP5	Q13451	457 aa	Predicted RBP	10.82	□□□□□ -0.68
USP28-215	ENST00000545608	ANGEL2	Q5VTE6	544 aa	Known RBP	10.82	□□□□□ -0.68
USP28-215	ENST00000545608	RGMB	Q6NW40	437 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	USP17L1	Q7RTZ2	530 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	TXNRD3	Q86VQ6	643 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	WDR63	Q8IWG1	891 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	SULF1	Q8IWU6	871 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	C2orf69	Q8N8R5	385 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	ABHD8	Q96I13	439 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	MXD3	Q9BW11	206 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	PLA2G12B	Q9BX93	195 aa		10.82	□□□□□ -0.68
USP28-215	ENST00000545608	MED23	Q9ULK4	1368 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.81	□□□□□ -0.68
USP28-215	ENST00000545608	FAM155A	B1AL88	458 aa	Predicted RBP	10.81	□□□□□ -0.68
USP28-215	ENST00000545608	PRKAR2A	P13861	404 aa	Known RBP	10.81	□□□□□ -0.68
USP28-215	ENST00000545608	ITGA6	P23229	1130 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	IGHMBP2	P38935	993 aa	Known RBP	10.81	□□□□□ -0.68
USP28-215	ENST00000545608	NOG	Q13253	232 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	FAM161A	Q3B820	660 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	LINS1	Q8NG48	757 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	CDCA5	Q96FF9	252 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	MYOZ2	Q9NPC6	264 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608	ZNF609	O15014	1411 aa		10.81	□□□□□ -0.68
USP28-215	ENST00000545608		F6X3S4	739 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	CA12	O43570	354 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	KLRK1	P26718	216 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	KIF23	Q02241	960 aa	Predicted RBP	10.8	□□□□□ -0.68
USP28-215	ENST00000545608	DACT2	Q5SW24	774 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	COA1	Q9GZY4	146 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	MYH16	Q9H6N6	1097 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	SCAF8	Q9UPN6	1271 aa	Known RBP	10.8	□□□□□ -0.68
USP28-215	ENST00000545608	LEMD3	Q9Y2U8	911 aa		10.8	□□□□□ -0.68
USP28-215	ENST00000545608	ZEB1	P37275	1124 aa	Predicted RBP	10.79	□□□□□ -0.68
USP28-215	ENST00000545608	ZNF157	P51786	506 aa	Predicted RBP	10.79	□□□□□ -0.68
USP28-215	ENST00000545608	NBPF9	Q3BBW0	867 aa		10.79	□□□□□ -0.68
USP28-215	ENST00000545608	BEND3	Q5T5X7	828 aa		10.79	□□□□□ -0.68
USP28-215	ENST00000545608	ZNF579	Q8NAF0	562 aa	Known RBP	10.79	□□□□□ -0.68
USP28-215	ENST00000545608	FBXW7	Q969H0	707 aa		10.79	□□□□□ -0.68
USP28-215	ENST00000545608	CCDC102A	Q96A19	550 aa		10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms