RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 PREPLQ4J6C6 727 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 ACBD5Q5T8D3 534 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 NEK11Q8NG66 645 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 ERP27Q96DN0 273 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 POLR3CQ9BUI4 534 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 KCTD2Q14681 263 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 NAALADL2Q58DX5 795 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 SPECC1Q5M775 1068 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 KCNV1Q6PIU1 500 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 CCDC80Q76M96 950 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 CENPTQ96BT3 561 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 MUC3BQ9H195 1237 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 TTC12Q9H892 705 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 IQCB1Q15051 598 aa10.24□□□□□ -0.77
VPS13D-212ENST00000543766 PDGFDQ9GZP0 370 aaPredicted RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 DHX36Q9H2U1 1008 aaKnown RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 RRP15Q9Y3B9 282 aaKnown RBP10.24□□□□□ -0.77
VPS13D-212ENST00000543766 ABCC1P33527 1531 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 SYCP2Q9BX26 1530 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 BIN1O00499 593 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 PYGBP11216 843 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 CD53P19397 219 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 TRPC1P48995 793 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 NUCB2P80303 420 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 DDB1Q16531 1140 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 TBC1D25Q3MII6 688 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 CCDC186Q7Z3E2 898 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 JDP2Q8WYK2 163 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 TSR2Q969E8 191 aaKnown RBP10.23□□□□□ -0.77
VPS13D-212ENST00000543766 RMDN2Q96LZ7 410 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 INTUQ9ULD6 942 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 TBX4P57082 545 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 ZNF445P59923 1031 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 RAB3GAP1Q15042 981 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 ZKSCAN5Q9Y2L8 839 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 NINLQ9Y2I6 1382 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 ATP6V1G1O75348 118 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 MYL1P05976 194 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 RPSAP08865 295 aaKnown RBP10.23□□□□□ -0.77
VPS13D-212ENST00000543766 NSUN2Q08J23 767 aaKnown RBP eCLIP10.23□□□□□ -0.77
VPS13D-212ENST00000543766 COBLL1Q53SF7 1204 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 NDUFAF2Q8N183 169 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 TRPM1Q7Z4N2 1603 aa10.23□□□□□ -0.77
VPS13D-212ENST00000543766 LSM1O15116 133 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 SCG2P13521 617 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 PPP2R5CQ13362 524 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 BIRC3Q13489 604 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 RCN1Q15293 331 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 SFMBT2Q5VUG0 894 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 GIGYF2Q6Y7W6 1299 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 SAMD14Q8IZD0 417 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 TATDN2Q93075 761 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 CCDC114Q96M63 670 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 LMCD1Q9NZU5 365 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 TSPOAP1O95153 1857 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 MAGEA10P43363 369 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 ZNF132P52740 706 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 PTPROQ16827 1216 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 ARHGEF25Q86VW2 580 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 DRC7Q8IY82 874 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 PARD3BQ8TEW8 1205 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 RPGRQ92834 1020 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 SNX21Q969T3 373 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 BEGAINQ9BUH8 593 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 POLKQ9UBT6 870 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 PABPN1LA6NDY0 278 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 KIAA0754O94854 1291 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 EIF5P55010 431 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 MAP7D1Q3KQU3 841 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 TTC39BQ5VTQ0 682 aaPredicted RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 CCAR1Q8IX12 1150 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 MGARPQ8TDB4 240 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 DDX27Q96GQ7 796 aaKnown RBP10.22□□□□□ -0.77
VPS13D-212ENST00000543766 TCHPQ9BT92 498 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 TRIM7Q9C029 511 aa10.22□□□□□ -0.77
VPS13D-212ENST00000543766 FAM135AQ9P2D6 1515 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 PLEKHG4BQ96PX9 1271 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 KIF9Q9HAQ2 790 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 ANKIB1Q9P2G1 1089 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 ARHGAP5Q13017 1502 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 GSCP56915 257 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-212ENST00000543766 ADCY1Q08828 1119 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 HELQQ8TDG4 1101 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 N4BP2L2Q92802 583 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-212ENST00000543766 MIEF2Q96C03 454 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 MMADHCQ9H3L0 296 aaPredicted RBP10.21□□□□□ -0.77
VPS13D-212ENST00000543766 CNPY2Q9Y2B0 182 aa10.21□□□□□ -0.77
VPS13D-212ENST00000543766 ASXL2Q76L83 1435 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 ENO4A6NNW6 628 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 PRPHP41219 470 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 SYCP2LQ5T4T6 812 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 RNF20Q5VTR2 975 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 CCSAPQ6IQ19 270 aaPredicted RBP10.21□□□□□ -0.78
VPS13D-212ENST00000543766 RELL1Q8IUW5 271 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 WDR63Q8IWG1 891 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 LMNTD2Q8IXW0 634 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 SYAP1Q96A49 352 aaPredicted RBP10.21□□□□□ -0.78
VPS13D-212ENST00000543766 DIAPH3Q9NSV4 1193 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 TBC1D2BQ9UPU7 963 aa10.21□□□□□ -0.78
VPS13D-212ENST00000543766 NEO1Q92859 1461 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms