RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 FKBP4Q02790 459 aaKnown RBP eCLIP14.29□□□□□ -0.12
YBX3-213ENST00000542641 ATP2B3Q16720 1220 aa14.29□□□□□ -0.12
YBX3-213ENST00000542641 B4GALNT3Q6L9W6 998 aa14.29□□□□□ -0.12
YBX3-213ENST00000542641 SMC5Q8IY18 1101 aa14.29□□□□□ -0.12
YBX3-213ENST00000542641 EYA3Q99504 573 aa14.29□□□□□ -0.12
YBX3-213ENST00000542641 RTFDC1Q9BY42 306 aaPredicted RBP14.29□□□□□ -0.12
YBX3-213ENST00000542641 IL1RAPL2Q9NP60 686 aa14.29□□□□□ -0.12
YBX3-213ENST00000542641 ZBTB47Q9UFB7 747 aaPredicted RBP14.29□□□□□ -0.12
YBX3-213ENST00000542641 LRRC37AA6NMS7 1700 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 NFKBIEO00221 500 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 SMARCA5O60264 1052 aaPredicted RBP14.28□□□□□ -0.12
YBX3-213ENST00000542641 IFIT1P09914 478 aaKnown RBP14.28□□□□□ -0.12
YBX3-213ENST00000542641 SLC5A1P13866 664 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 FGFR2P21802 821 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 TIMM10P62072 90 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 WASHC4Q2M389 1173 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 TNNI3KQ59H18 835 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 ANKRD45Q5TZF3 282 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 CLASRPQ8N2M8 674 aaKnown RBP14.28□□□□□ -0.12
YBX3-213ENST00000542641 SNED1Q8TER0 1413 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 LPIN2Q92539 896 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 NEUROD6Q96NK8 337 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 GPR101Q96P66 508 aaPredicted RBP14.28□□□□□ -0.12
YBX3-213ENST00000542641 ZC3H12CQ9C0D7 883 aaKnown RBP14.28□□□□□ -0.12
YBX3-213ENST00000542641 GPR108Q9NPR9 543 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 FPGT-TNNI3KV9GXZ4 949 aa14.28□□□□□ -0.12
YBX3-213ENST00000542641 LTBP3Q9NS15 1303 aa14.27□□□□□ -0.12
YBX3-213ENST00000542641 A0A1B0GUL7 405 aa14.27□□□□□ -0.13
YBX3-213ENST00000542641 RIMBP2O15034 1052 aa14.27□□□□□ -0.13
YBX3-213ENST00000542641 RASSF7Q02833 373 aa14.27□□□□□ -0.13
YBX3-213ENST00000542641 ZNF277Q9NRM2 450 aaPredicted RBP14.27□□□□□ -0.13
YBX3-213ENST00000542641 ARFGEF1Q9Y6D6 1849 aa14.27□□□□□ -0.13
YBX3-213ENST00000542641 PPIP5K2O43314 1243 aa14.26□□□□□ -0.13
YBX3-213ENST00000542641 KLRK1P26718 216 aa14.26□□□□□ -0.13
YBX3-213ENST00000542641 CENPQQ7L2Z9 268 aaPredicted RBP14.26□□□□□ -0.13
YBX3-213ENST00000542641 AACSQ86V21 672 aa14.26□□□□□ -0.13
YBX3-213ENST00000542641 EAF2Q96CJ1 260 aaPredicted RBP14.26□□□□□ -0.13
YBX3-213ENST00000542641 VPS33BQ9H267 617 aa14.26□□□□□ -0.13
YBX3-213ENST00000542641 G3V3G9 751 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 IFIT2P09913 472 aaKnown RBP14.25□□□□□ -0.13
YBX3-213ENST00000542641 ADORA1P30542 326 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 IARSP41252 1262 aaKnown RBP14.25□□□□□ -0.13
YBX3-213ENST00000542641 NUCB1Q02818 461 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 KIAA2012Q0VF49 1180 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 AOC3Q16853 763 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 CAVIN4Q5BKX8 364 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 GORABQ5T7V8 394 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 DCAF8Q5TAQ9 597 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 C15orf52Q6ZUT6 534 aaKnown RBP14.25□□□□□ -0.13
YBX3-213ENST00000542641 TXNRD3Q86VQ6 643 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 VPS37DQ86XT2 251 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 LARGE2Q8N3Y3 721 aa14.25□□□□□ -0.13
YBX3-213ENST00000542641 CCDC8Q9H0W5 538 aaPredicted RBP14.25□□□□□ -0.13
YBX3-213ENST00000542641 MED23Q9ULK4 1368 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 KDM2BQ8NHM5 1336 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 LMNB1P20700 586 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 GYG1P46976 350 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 CHD1LQ86WJ1 897 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 XAGE2Q96GT9 111 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 FAM84BQ96KN1 310 aaPredicted RBP14.24□□□□□ -0.13
YBX3-213ENST00000542641 GTF3C3Q9Y5Q9 886 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 DUOX1Q9NRD9 1551 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 LTBP1Q14766 1721 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 ZNF609O15014 1411 aa14.24□□□□□ -0.13
YBX3-213ENST00000542641 IRS2Q9Y4H2 1338 aa14.23□□□□□ -0.13
YBX3-213ENST00000542641 UTRNP46939 3433 aa14.23□□□□□ -0.13
YBX3-213ENST00000542641 HIBADHP31937 336 aaKnown RBP14.23□□□□□ -0.13
YBX3-213ENST00000542641 BCAMP50895 628 aa14.23□□□□□ -0.13
YBX3-213ENST00000542641 DOK7Q18PE1 504 aa14.23□□□□□ -0.13
YBX3-213ENST00000542641 ZNF804AQ7Z570 1209 aa14.23□□□□□ -0.13
YBX3-213ENST00000542641 LNPKQ9C0E8 428 aa14.23□□□□□ -0.13
YBX3-213ENST00000542641 PRELPP51888 382 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 CCDC158Q5M9N0 1113 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 FBXO33Q7Z6M2 555 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 C16orf71Q8IYS4 520 aaPredicted RBP14.22□□□□□ -0.13
YBX3-213ENST00000542641 JDP2Q8WYK2 163 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 DBNDD2Q9BQY9 259 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 COA1Q9GZY4 146 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 TLR7Q9NYK1 1049 aaKnown RBP14.22□□□□□ -0.13
YBX3-213ENST00000542641 DBNLQ9UJU6 430 aaKnown RBP14.22□□□□□ -0.13
YBX3-213ENST00000542641 FER1L6Q2WGJ9 1857 aa14.22□□□□□ -0.13
YBX3-213ENST00000542641 CCDC102BQ68D86 513 aa14.21□□□□□ -0.13
YBX3-213ENST00000542641 NIM1KQ8IY84 436 aa14.21□□□□□ -0.13
YBX3-213ENST00000542641 REM2Q8IYK8 340 aaPredicted RBP14.21□□□□□ -0.13
YBX3-213ENST00000542641 DBNDD1Q9H9R9 158 aa14.21□□□□□ -0.13
YBX3-213ENST00000542641 CD209Q9NNX6 404 aa14.21□□□□□ -0.13
YBX3-213ENST00000542641 GNL3LQ9NVN8 582 aaKnown RBP14.21□□□□□ -0.13
YBX3-213ENST00000542641 A0A1B0GUL6 1792 aa14.21□□□□□ -0.13
YBX3-213ENST00000542641 ECE2O60344 883 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 FRAT2O75474 233 aaPredicted RBP14.2□□□□□ -0.14
YBX3-213ENST00000542641 PHKA1P46020 1223 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 TTC39AQ5SRH9 613 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 C9orf131Q5VYM1 1079 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 PODNQ7Z5L7 613 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 GPATCH3Q96I76 525 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 RNF181Q9P0P0 153 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 ZNRF3Q9ULT6 936 aa14.2□□□□□ -0.14
YBX3-213ENST00000542641 IQSEC3Q9UPP2 1182 aaPredicted RBP14.2□□□□□ -0.14
YBX3-213ENST00000542641 OTUD7AQ8TE49 926 aaPredicted RBP14.19□□□□□ -0.14
YBX3-213ENST00000542641 UQCRFS1P1P0C7P4 283 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms