RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 AKAP11Q9UKA4 1901 aa18.06■□□□□ 0.48
SNHG1-213ENST00000540725 USP17L8P0C7I0 530 aa18.05■□□□□ 0.48
SNHG1-213ENST00000540725 IGHMBP2P38935 993 aaKnown RBP18.05■□□□□ 0.48
SNHG1-213ENST00000540725 SCARF1Q14162 830 aa18.05■□□□□ 0.48
SNHG1-213ENST00000540725 RGMBQ6NW40 437 aa18.05■□□□□ 0.48
SNHG1-213ENST00000540725 WDR63Q8IWG1 891 aa18.05■□□□□ 0.48
SNHG1-213ENST00000540725 ZIC5Q96T25 663 aa18.05■□□□□ 0.48
SNHG1-213ENST00000540725 PLA2G12BQ9BX93 195 aa18.05■□□□□ 0.48
SNHG1-213ENST00000540725 CASP7P55210 303 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 ANGEL2Q5VTE6 544 aaKnown RBP18.04■□□□□ 0.48
SNHG1-213ENST00000540725 LINS1Q8NG48 757 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 CDCA5Q96FF9 252 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 MYOZ2Q9NPC6 264 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 A0A1B0GUL6 1792 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 VAMP4O75379 141 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 ITGA6P23229 1130 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 ZEB1P37275 1124 aaPredicted RBP18.04■□□□□ 0.48
SNHG1-213ENST00000540725 EXOSC9Q06265 439 aaKnown RBP18.04■□□□□ 0.48
SNHG1-213ENST00000540725 FAM161AQ3B820 660 aa18.04■□□□□ 0.48
SNHG1-213ENST00000540725 FAM155AB1AL88 458 aaPredicted RBP18.03■□□□□ 0.48
SNHG1-213ENST00000540725 COA1Q9GZY4 146 aa18.03■□□□□ 0.48
SNHG1-213ENST00000540725 LEMD3Q9Y2U8 911 aa18.03■□□□□ 0.48
SNHG1-213ENST00000540725 PAPPA2Q9BXP8 1791 aa18.02■□□□□ 0.48
SNHG1-213ENST00000540725 ZNF316A6NFI3 1004 aaPredicted RBP18.02■□□□□ 0.47
SNHG1-213ENST00000540725 CSF1RP07333 972 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 ZNF157P51786 506 aaPredicted RBP18.02■□□□□ 0.47
SNHG1-213ENST00000540725 DACT2Q5SW24 774 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 TXNRD3Q86VQ6 643 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 FBXW7Q969H0 707 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 CCDC102AQ96A19 550 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 MPHOSPH8Q99549 860 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 ANKRD2Q9GZV1 360 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 PITPNM2Q9BZ72 1349 aa18.02■□□□□ 0.47
SNHG1-213ENST00000540725 STRIP1Q5VSL9 837 aa18.01■□□□□ 0.47
SNHG1-213ENST00000540725 MXD3Q9BW11 206 aa18.01■□□□□ 0.47
SNHG1-213ENST00000540725 ZNF804BA4D1E1 1349 aa18.01■□□□□ 0.47
SNHG1-213ENST00000540725 KLRK1P26718 216 aa18■□□□□ 0.47
SNHG1-213ENST00000540725 MYO3BQ8WXR4 1341 aa18■□□□□ 0.47
SNHG1-213ENST00000540725 F6X3S4 739 aa17.99■□□□□ 0.47
SNHG1-213ENST00000540725 SLC10A3P09131 477 aa17.99■□□□□ 0.47
SNHG1-213ENST00000540725 KIF23Q02241 960 aaPredicted RBP17.99■□□□□ 0.47
SNHG1-213ENST00000540725 NBPF9Q3BBW0 867 aa17.99■□□□□ 0.47
SNHG1-213ENST00000540725 OGFOD1Q8N543 542 aa17.99■□□□□ 0.47
SNHG1-213ENST00000540725 SPINK5Q9NQ38 1064 aaPredicted RBP17.99■□□□□ 0.47
SNHG1-213ENST00000540725 ANKRD18BA2A2Z9 1011 aa17.98■□□□□ 0.47
SNHG1-213ENST00000540725 KCNJ4P48050 445 aa17.98■□□□□ 0.47
SNHG1-213ENST00000540725 CHRNDQ07001 517 aa17.98■□□□□ 0.47
SNHG1-213ENST00000540725 SCAF8Q9UPN6 1271 aaKnown RBP17.98■□□□□ 0.47
SNHG1-213ENST00000540725 FKBP1BP68106 108 aa17.97■□□□□ 0.47
SNHG1-213ENST00000540725 BEND3Q5T5X7 828 aa17.97■□□□□ 0.47
SNHG1-213ENST00000540725 TTLL5Q6EMB2 1281 aa17.97■□□□□ 0.47
SNHG1-213ENST00000540725 WNT10BO00744 389 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 FOXO4P98177 505 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 IFIT5Q13325 482 aaKnown RBP17.96■□□□□ 0.47
SNHG1-213ENST00000540725 FAM9BQ8IZU0 186 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 MCOLN1Q9GZU1 580 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 SAGE1Q9NXZ1 904 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 CHMP3Q9Y3E7 222 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 ECM29Q5VYK3 1845 aa17.96■□□□□ 0.47
SNHG1-213ENST00000540725 CCDC85CA6NKD9 419 aa17.95■□□□□ 0.46
SNHG1-213ENST00000540725 SASH1O94885 1247 aa17.95■□□□□ 0.46
SNHG1-213ENST00000540725 MMP14P50281 582 aa17.95■□□□□ 0.46
SNHG1-213ENST00000540725 GTF2IP78347 998 aa17.95■□□□□ 0.46
SNHG1-213ENST00000540725 RASAL3Q86YV0 1011 aa17.95■□□□□ 0.46
SNHG1-213ENST00000540725 SNAP23O00161 211 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 PRAMEF18Q5VWM3 479 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 MOB2Q70IA6 237 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 KIAA0825Q8IV33 1275 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 HELBQ8NG08 1087 aaPredicted RBP17.94■□□□□ 0.46
SNHG1-213ENST00000540725 CSRNP1Q96S65 589 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 CD209Q9NNX6 404 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 RNF186Q9NXI6 227 aa17.94■□□□□ 0.46
SNHG1-213ENST00000540725 IRS2Q9Y4H2 1338 aa17.93■□□□□ 0.46
SNHG1-213ENST00000540725 TAF5LO75529 589 aa17.93■□□□□ 0.46
SNHG1-213ENST00000540725 TRPA1O75762 1119 aa17.93■□□□□ 0.46
SNHG1-213ENST00000540725 DGKZQ13574 1117 aa17.93■□□□□ 0.46
SNHG1-213ENST00000540725 LMBR1LQ6UX01 489 aa17.93■□□□□ 0.46
SNHG1-213ENST00000540725 HDAC9Q9UKV0 1011 aa17.93■□□□□ 0.46
SNHG1-213ENST00000540725 UBE2Q2LH0YL09 131 aa17.92■□□□□ 0.46
SNHG1-213ENST00000540725 GRM8O00222 908 aa17.92■□□□□ 0.46
SNHG1-213ENST00000540725 EPHA10Q5JZY3 1008 aa17.92■□□□□ 0.46
SNHG1-213ENST00000540725 C15orf52Q6ZUT6 534 aaKnown RBP17.92■□□□□ 0.46
SNHG1-213ENST00000540725 TTLL12Q14166 644 aaPredicted RBP17.91■□□□□ 0.46
SNHG1-213ENST00000540725 REM2Q8IYK8 340 aaPredicted RBP17.91■□□□□ 0.46
SNHG1-213ENST00000540725 ZBED3Q96IU2 234 aaPredicted RBP17.91■□□□□ 0.46
SNHG1-213ENST00000540725 ALDH1L1O75891 902 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 NF2P35240 595 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 CCDC57Q2TAC2 916 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 TAF7LQ5H9L4 462 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 SLC4A10Q6U841 1118 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 ZNF804AQ7Z570 1209 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 APOBEC3FQ8IUX4 373 aaKnown RBP17.91■□□□□ 0.46
SNHG1-213ENST00000540725 CERS5Q8N5B7 392 aa17.91■□□□□ 0.46
SNHG1-213ENST00000540725 ZNF594Q96JF6 807 aaPredicted RBP17.91■□□□□ 0.46
SNHG1-213ENST00000540725 C9orf78Q9NZ63 289 aaPredicted RBP17.91■□□□□ 0.46
SNHG1-213ENST00000540725 LDHAL6AQ6ZMR3 332 aa17.9■□□□□ 0.46
SNHG1-213ENST00000540725 SRCIN1Q9C0H9 1055 aa17.9■□□□□ 0.46
SNHG1-213ENST00000540725 IL1R1P14778 569 aa17.89■□□□□ 0.45
SNHG1-213ENST00000540725 CNNM1Q9NRU3 951 aa17.89■□□□□ 0.45
SNHG1-213ENST00000540725 COL1A1P02452 1464 aaPredicted RBP17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms