RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 ABI2Q9NYB9 513 aaPredicted RBP4.71□□□□□ -1.66
CD44-234ENST00000531873 PCDHGB7Q9Y5F8 929 aa4.71□□□□□ -1.66
CD44-234ENST00000531873 USP31Q70CQ4 1352 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 GIPC1O14908 333 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 DYRK3O43781 588 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 CYP2E1P05181 493 aaPredicted RBP4.7□□□□□ -1.66
CD44-234ENST00000531873 USP17L7P0C7H9 530 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 SPATA31C1P0DKV0 1188 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 TNNI2P48788 182 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 RACK1P63244 317 aaKnown RBP4.7□□□□□ -1.66
CD44-234ENST00000531873 GRM2Q14416 872 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 SF3A1Q15459 793 aaKnown RBP4.7□□□□□ -1.66
CD44-234ENST00000531873 NXPE4Q6UWF7 544 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 NBPF11Q86T75 865 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 NLRP13Q86W25 1043 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 GLIS3Q8NEA6 775 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 CCSER2Q9H7U1 834 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 NEUROD4Q9HD90 331 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 C11orf16Q9NQ32 467 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 FAM8A1Q9UBU6 413 aa4.7□□□□□ -1.66
CD44-234ENST00000531873 DDX41Q9UJV9 622 aaKnown RBP4.7□□□□□ -1.66
CD44-234ENST00000531873 FAM157BP0CG42 384 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 FGFR3P22607 806 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 CTBSQ01459 385 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 SFSWAPQ12872 951 aaKnown RBP4.69□□□□□ -1.66
CD44-234ENST00000531873 PEAR1Q5VY43 1037 aaPredicted RBP4.69□□□□□ -1.66
CD44-234ENST00000531873 SLC43A3Q8NBI5 491 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 C3orf58Q8NDZ4 430 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 UBXN4Q92575 508 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 BCO2Q9BYV7 579 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 SRCIN1Q9C0H9 1055 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 SRA1Q9HD15 236 aaKnown RBP4.69□□□□□ -1.66
CD44-234ENST00000531873 LATS2Q9NRM7 1088 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 NLRP2Q9NX02 1062 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 KANSL3Q9P2N6 904 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.69□□□□□ -1.66
CD44-234ENST00000531873 GJA3Q9Y6H8 435 aa4.69□□□□□ -1.66
CD44-234ENST00000531873 DCDC2BA2VCK2 349 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 SASH3O75995 380 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 ST13P50502 369 aaKnown RBP4.68□□□□□ -1.66
CD44-234ENST00000531873 CHSY3Q70JA7 882 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 HS2ST1Q7LGA3 356 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 ERMP1Q7Z2K6 904 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 USP48Q86UV5 1035 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 PGBD3Q8N328 593 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 TRIM11Q96F44 468 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 KRTAP4-7Q9BYR0 210 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 GSX2Q9BZM3 304 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 CAPN10Q9HC96 672 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 STRN4Q9NRL3 753 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 TPSG1Q9NRR2 321 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 ZFATQ9P243 1243 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 KCNH4Q9UQ05 1017 aa4.68□□□□□ -1.66
CD44-234ENST00000531873 A0A1W2PP55 124 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 BNIP3LO60238 219 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 MMP20O60882 483 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 GADD45BO75293 160 aaPredicted RBP4.67□□□□□ -1.66
CD44-234ENST00000531873 CES1P23141 567 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 TARSP26639 723 aaKnown RBP4.67□□□□□ -1.66
CD44-234ENST00000531873 LRP8Q14114 963 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 TAF1CQ15572 869 aaPredicted RBP4.67□□□□□ -1.66
CD44-234ENST00000531873 EFHC2Q5JST6 749 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 KIAA0319Q5VV43 1072 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 PRPF40BQ6NWY9 871 aaKnown RBP4.67□□□□□ -1.66
CD44-234ENST00000531873 KRT25Q7Z3Z0 450 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 OR13H1Q8NG92 308 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 ABHD17AQ96GS6 310 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 GMLQ99445 158 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 ABCB6Q9NP58 842 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 AVENQ9NQS1 362 aaPredicted RBP4.67□□□□□ -1.66
CD44-234ENST00000531873 SALL4Q9UJQ4 1053 aa4.67□□□□□ -1.66
CD44-234ENST00000531873 NEURL1BA8MQ27 555 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 ATXN7O15265 892 aaPredicted RBP4.66□□□□□ -1.66
CD44-234ENST00000531873 KIF4AO95239 1232 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 ACPPP15309 386 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 TNP2Q05952 138 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 CCINQ13939 588 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 PRSS36Q5K4E3 855 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 COL13A1Q5TAT6 717 aaPredicted RBP4.66□□□□□ -1.66
CD44-234ENST00000531873 ZNF654Q8IZM8 581 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 PLVAPQ9BX97 442 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 TANGO6Q9C0B7 1094 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 COPRSQ9NQ92 184 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 PRKAG2Q9UGJ0 569 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 GGT7Q9UJ14 662 aa4.66□□□□□ -1.66
CD44-234ENST00000531873 KHNYNO15037 678 aaKnown RBP4.65□□□□□ -1.67
CD44-234ENST00000531873 RARAP10276 462 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 MAPTP10636 758 aaKnown RBP4.65□□□□□ -1.67
CD44-234ENST00000531873 HOXD8P13378 290 aaPredicted RBP4.65□□□□□ -1.67
CD44-234ENST00000531873 EDN3P14138 238 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 GSTT1P30711 240 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 GJA8P48165 433 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 FAM182BQ5T319 152 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 LCE1DQ5T752 114 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 TTC39BQ5VTQ0 682 aaPredicted RBP4.65□□□□□ -1.67
CD44-234ENST00000531873 FIGNL1Q6PIW4 674 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 PMEPA1Q969W9 287 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 TCF12Q99081 682 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 TRIM56Q9BRZ2 755 aaKnown RBP4.65□□□□□ -1.67
CD44-234ENST00000531873 PPP1R1BQ9UD71 204 aaPredicted RBP4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms