RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 GCKRQ14397 625 aa14.53□□□□□ -0.08
VPS28-214ENST00000531032 MRS2Q9HD23 443 aa14.53□□□□□ -0.08
VPS28-214ENST00000531032 PITPNM2Q9BZ72 1349 aa14.52□□□□□ -0.08
VPS28-214ENST00000531032 ANGEL2Q5VTE6 544 aaKnown RBP14.52□□□□□ -0.09
VPS28-214ENST00000531032 WDR63Q8IWG1 891 aa14.52□□□□□ -0.09
VPS28-214ENST00000531032 DNAAF4Q8WXU2 420 aa14.52□□□□□ -0.09
VPS28-214ENST00000531032 CCDC102AQ96A19 550 aa14.52□□□□□ -0.09
VPS28-214ENST00000531032 CDCA5Q96FF9 252 aa14.52□□□□□ -0.09
VPS28-214ENST00000531032 MYOZ2Q9NPC6 264 aa14.52□□□□□ -0.09
VPS28-214ENST00000531032 VAMP4O75379 141 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 CSF1RP07333 972 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 ITGA6P23229 1130 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 IGHMBP2P38935 993 aaKnown RBP14.51□□□□□ -0.09
VPS28-214ENST00000531032 FKBP5Q13451 457 aaPredicted RBP14.51□□□□□ -0.09
VPS28-214ENST00000531032 FAM161AQ3B820 660 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 DACT2Q5SW24 774 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 LINS1Q8NG48 757 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 COA1Q9GZY4 146 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 MYH16Q9H6N6 1097 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 LEMD3Q9Y2U8 911 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 PAPPA2Q9BXP8 1791 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 CASP8AP2Q9UKL3 1982 aa14.51□□□□□ -0.09
VPS28-214ENST00000531032 SLC10A3P09131 477 aa14.5□□□□□ -0.09
VPS28-214ENST00000531032 ZNF157P51786 506 aaPredicted RBP14.5□□□□□ -0.09
VPS28-214ENST00000531032 STRIP1Q5VSL9 837 aa14.5□□□□□ -0.09
VPS28-214ENST00000531032 TXNRD3Q86VQ6 643 aa14.5□□□□□ -0.09
VPS28-214ENST00000531032 ZNF804BA4D1E1 1349 aa14.49□□□□□ -0.09
VPS28-214ENST00000531032 MYO3BQ8WXR4 1341 aa14.49□□□□□ -0.09
VPS28-214ENST00000531032 FKBP1BP68106 108 aa14.49□□□□□ -0.09
VPS28-214ENST00000531032 ANKRD2Q9GZV1 360 aa14.49□□□□□ -0.09
VPS28-214ENST00000531032 SAGE1Q9NXZ1 904 aa14.49□□□□□ -0.09
VPS28-214ENST00000531032 A0A1B0GUL6 1792 aa14.48□□□□□ -0.09
VPS28-214ENST00000531032 ANP32CO43423 234 aa14.48□□□□□ -0.09
VPS28-214ENST00000531032 KLRK1P26718 216 aa14.48□□□□□ -0.09
VPS28-214ENST00000531032 MMP14P50281 582 aa14.48□□□□□ -0.09
VPS28-214ENST00000531032 KIF23Q02241 960 aaPredicted RBP14.48□□□□□ -0.09
VPS28-214ENST00000531032 EXOSC9Q06265 439 aaKnown RBP14.48□□□□□ -0.09
VPS28-214ENST00000531032 MPHOSPH8Q99549 860 aa14.48□□□□□ -0.09
VPS28-214ENST00000531032 MXD3Q9BW11 206 aa14.48□□□□□ -0.09
VPS28-214ENST00000531032 NBPF9Q3BBW0 867 aa14.47□□□□□ -0.09
VPS28-214ENST00000531032 OGFOD1Q8N543 542 aa14.47□□□□□ -0.09
VPS28-214ENST00000531032 MCOLN1Q9GZU1 580 aa14.47□□□□□ -0.09
VPS28-214ENST00000531032 AKAP11Q9UKA4 1901 aa14.47□□□□□ -0.09
VPS28-214ENST00000531032 IRS2Q9Y4H2 1338 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 ANKRD18BA2A2Z9 1011 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 WNT10BO00744 389 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 FOXO4P98177 505 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 CHRNDQ07001 517 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 BEND3Q5T5X7 828 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 TTLL5Q6EMB2 1281 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 RASAL3Q86YV0 1011 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 FBXW7Q969H0 707 aa14.46□□□□□ -0.09
VPS28-214ENST00000531032 SPINK5Q9NQ38 1064 aaPredicted RBP14.46□□□□□ -0.09
VPS28-214ENST00000531032 SALL2Q9Y467 1007 aaPredicted RBP14.46□□□□□ -0.09
VPS28-214ENST00000531032 CCDC85CA6NKD9 419 aa14.45□□□□□ -0.1
VPS28-214ENST00000531032 F6X3S4 739 aa14.45□□□□□ -0.1
VPS28-214ENST00000531032 REM2Q8IYK8 340 aaPredicted RBP14.45□□□□□ -0.1
VPS28-214ENST00000531032 CSRNP1Q96S65 589 aa14.45□□□□□ -0.1
VPS28-214ENST00000531032 RNF186Q9NXI6 227 aa14.45□□□□□ -0.1
VPS28-214ENST00000531032 SCAF8Q9UPN6 1271 aaKnown RBP14.45□□□□□ -0.1
VPS28-214ENST00000531032 ZNF316A6NFI3 1004 aaPredicted RBP14.44□□□□□ -0.1
VPS28-214ENST00000531032 KCNJ4P48050 445 aa14.44□□□□□ -0.1
VPS28-214ENST00000531032 IFIT5Q13325 482 aaKnown RBP14.44□□□□□ -0.1
VPS28-214ENST00000531032 DGKZQ13574 1117 aa14.44□□□□□ -0.1
VPS28-214ENST00000531032 C15orf52Q6ZUT6 534 aaKnown RBP14.44□□□□□ -0.1
VPS28-214ENST00000531032 CD209Q9NNX6 404 aa14.44□□□□□ -0.1
VPS28-214ENST00000531032 TRPA1O75762 1119 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 SASH1O94885 1247 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 RGS19P49795 217 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 GTF2IP78347 998 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 PRAMEF18Q5VWM3 479 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 MOB2Q70IA6 237 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 KIAA0825Q8IV33 1275 aa14.43□□□□□ -0.1
VPS28-214ENST00000531032 ZBED3Q96IU2 234 aaPredicted RBP14.43□□□□□ -0.1
VPS28-214ENST00000531032 SNAP23O00161 211 aa14.42□□□□□ -0.1
VPS28-214ENST00000531032 GRM8O00222 908 aa14.42□□□□□ -0.1
VPS28-214ENST00000531032 TAF5LO75529 589 aa14.42□□□□□ -0.1
VPS28-214ENST00000531032 HDAC9Q9UKV0 1011 aa14.42□□□□□ -0.1
VPS28-214ENST00000531032 UBE2Q2LH0YL09 131 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 IL1R1P14778 569 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 NF2P35240 595 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 EPHA10Q5JZY3 1008 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 LMBR1LQ6UX01 489 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 APOBEC3FQ8IUX4 373 aaKnown RBP14.41□□□□□ -0.1
VPS28-214ENST00000531032 CERS5Q8N5B7 392 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 HELBQ8NG08 1087 aaPredicted RBP14.41□□□□□ -0.1
VPS28-214ENST00000531032 CHMP3Q9Y3E7 222 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 COL1A1P02452 1464 aaPredicted RBP14.41□□□□□ -0.1
VPS28-214ENST00000531032 ECM29Q5VYK3 1845 aa14.41□□□□□ -0.1
VPS28-214ENST00000531032 ALDH1L1O75891 902 aa14.4□□□□□ -0.1
VPS28-214ENST00000531032 ZNF521Q96K83 1311 aa14.4□□□□□ -0.1
VPS28-214ENST00000531032 FKBP1AP62942 108 aaKnown RBP14.39□□□□□ -0.11
VPS28-214ENST00000531032 MLLT1Q03111 559 aaPredicted RBP14.39□□□□□ -0.11
VPS28-214ENST00000531032 TTLL12Q14166 644 aaPredicted RBP14.39□□□□□ -0.11
VPS28-214ENST00000531032 CCDC57Q2TAC2 916 aa14.39□□□□□ -0.11
VPS28-214ENST00000531032 ZNF804AQ7Z570 1209 aa14.39□□□□□ -0.11
VPS28-214ENST00000531032 MTMR14Q8NCE2 650 aa14.39□□□□□ -0.11
VPS28-214ENST00000531032 DLGAP5Q15398 846 aa14.38□□□□□ -0.11
VPS28-214ENST00000531032 LDHAL6AQ6ZMR3 332 aa14.38□□□□□ -0.11
VPS28-214ENST00000531032 ARMC9Q7Z3E5 817 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms