RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 PPFIA3O75145 1194 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 H3BQV1 296 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 CYP2C19P33261 490 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 CLCN6P51797 869 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 IFFO2Q5TF58 517 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 KCNB2Q92953 911 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 MRFAP1L1Q96HT8 127 aa16.59■□□□□ 0.25
USP48-213ENST00000529637 TAF5LO75529 589 aa16.58■□□□□ 0.25
USP48-213ENST00000529637 TOB2Q14106 344 aaPredicted RBP16.58■□□□□ 0.25
USP48-213ENST00000529637 IPO4Q8TEX9 1081 aaKnown RBP16.58■□□□□ 0.25
USP48-213ENST00000529637 USP54Q70EL1 1684 aa16.58■□□□□ 0.25
USP48-213ENST00000529637 KDM6AO15550 1401 aaPredicted RBP16.58■□□□□ 0.25
USP48-213ENST00000529637 SARM1Q6SZW1 724 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 ZBTB3Q9H5J0 574 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 COPRSQ9NQ92 184 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 GOLIM4O00461 696 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 H2AFXP16104 143 aaPredicted RBP16.58■□□□□ 0.24
USP48-213ENST00000529637 SLFNL1Q499Z3 407 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 DHX40Q8IX18 779 aaKnown RBP16.58■□□□□ 0.24
USP48-213ENST00000529637 NEK1Q96PY6 1258 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 CALCOCO1Q9P1Z2 691 aa16.58■□□□□ 0.24
USP48-213ENST00000529637 C1orf167Q5SNV9 1468 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 ATP5JP18859 108 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 PLA2G4AP47712 749 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 E4F1Q66K89 784 aaPredicted RBP16.57■□□□□ 0.24
USP48-213ENST00000529637 SYT10Q6XYQ8 523 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 HMG20BQ9P0W2 317 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 TIMM10P62072 90 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 OVOS2A0A0G2JMS6 1433 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 Q6ZUG5 572 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 CCDC85AQ96PX6 553 aaPredicted RBP16.57■□□□□ 0.24
USP48-213ENST00000529637 GOLPH3LQ9H4A5 285 aa16.57■□□□□ 0.24
USP48-213ENST00000529637 BECN2A8MW95 431 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 NBPF11Q86T75 865 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 BRF1Q92994 677 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 POLR3GO15318 223 aaPredicted RBP16.56■□□□□ 0.24
USP48-213ENST00000529637 KRT32Q14532 448 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 GORABQ5T7V8 394 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 NEK11Q8NG66 645 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 TAOK2Q9UL54 1235 aa16.56■□□□□ 0.24
USP48-213ENST00000529637 MEGF6O75095 1541 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 PNMA6AP0CW24 399 aaPredicted RBP16.55■□□□□ 0.24
USP48-213ENST00000529637 BMS1Q14692 1282 aaKnown RBP16.55■□□□□ 0.24
USP48-213ENST00000529637 TRIM34Q9BYJ4 488 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 SNW1Q13573 536 aaKnown RBP16.55■□□□□ 0.24
USP48-213ENST00000529637 MCMDC2Q4G0Z9 681 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 TTLL7Q6ZT98 887 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 TOM1L2Q6ZVM7 507 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 A1BGP04217 495 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 RESTQ13127 1097 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 ARHGAP29Q52LW3 1261 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 AOPEPQ8N6M6 819 aa16.55■□□□□ 0.24
USP48-213ENST00000529637 ZNF594Q96JF6 807 aaPredicted RBP16.55■□□□□ 0.24
USP48-213ENST00000529637 ZKSCAN7Q9P0L1 754 aaPredicted RBP16.55■□□□□ 0.24
USP48-213ENST00000529637 MED23Q9ULK4 1368 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 NEMFO60524 1076 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 RFX5P48382 616 aaPredicted RBP16.54■□□□□ 0.24
USP48-213ENST00000529637 U3KPZ7 1027 aaPredicted RBP16.54■□□□□ 0.24
USP48-213ENST00000529637 PLBD2Q8NHP8 589 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 PPP1R13BQ96KQ4 1090 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 L2HGDHQ9H9P8 463 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 ZCCHC17Q9NP64 241 aaKnown RBP16.54■□□□□ 0.24
USP48-213ENST00000529637 SLIT3O75094 1523 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 RGPD5Q99666 1765 aa16.54■□□□□ 0.24
USP48-213ENST00000529637 CYP21A2P08686 494 aa16.53■□□□□ 0.24
USP48-213ENST00000529637 CCAR1Q8IX12 1150 aaKnown RBP16.53■□□□□ 0.24
USP48-213ENST00000529637 EPC1Q9H2F5 836 aa16.53■□□□□ 0.24
USP48-213ENST00000529637 PRDM11Q9NQV5 511 aa16.53■□□□□ 0.24
USP48-213ENST00000529637 SEC31AO94979 1220 aaKnown RBP16.53■□□□□ 0.24
USP48-213ENST00000529637 STX1AQ16623 288 aa16.53■□□□□ 0.24
USP48-213ENST00000529637 CCDC93Q567U6 631 aa16.53■□□□□ 0.24
USP48-213ENST00000529637 CCT2P78371 535 aaKnown RBP16.53■□□□□ 0.24
USP48-213ENST00000529637 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.53■□□□□ 0.241e-7■■■■□ 23.7
USP48-213ENST00000529637 TMEM94Q12767 1356 aa16.52■□□□□ 0.24
USP48-213ENST00000529637 ST5P78524 1137 aa16.52■□□□□ 0.24
USP48-213ENST00000529637 FKBP4Q02790 459 aaKnown RBP eCLIP16.52■□□□□ 0.24
USP48-213ENST00000529637 RAD51AP2Q09MP3 1159 aa16.52■□□□□ 0.24
USP48-213ENST00000529637 CHST3Q7LGC8 479 aa16.52■□□□□ 0.24
USP48-213ENST00000529637 CWC25Q9NXE8 425 aaPredicted RBP16.52■□□□□ 0.24
USP48-213ENST00000529637 ARMCX5Q6P1M9 558 aa16.52■□□□□ 0.23
USP48-213ENST00000529637 SNRKQ9NRH2 765 aa16.52■□□□□ 0.23
USP48-213ENST00000529637 FEZ2Q9UHY8 353 aaPredicted RBP16.52■□□□□ 0.23
USP48-213ENST00000529637 ADD1P35611 737 aaKnown RBP16.51■□□□□ 0.23
USP48-213ENST00000529637 HAUS7Q99871 368 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 FANCGO15287 622 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 KBTBD3Q8NAB2 608 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 STRN4Q9NRL3 753 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 PAG1Q9NWQ8 432 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.51■□□□□ 0.238e-9■■□□□ 11.7
USP48-213ENST00000529637 NBPF26B4DH59 902 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 GUCY1B3Q02153 619 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 NBPF14Q5TI25 921 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 NBPF10Q6P3W6 841 aaKnown RBP16.51■□□□□ 0.23
USP48-213ENST00000529637 NBPF15Q8N660 670 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 ZNF609O15014 1411 aa16.51■□□□□ 0.23
USP48-213ENST00000529637 IFIT1P09914 478 aaKnown RBP16.5■□□□□ 0.23
USP48-213ENST00000529637 APOBRQ0VD83 1088 aa16.5■□□□□ 0.23
USP48-213ENST00000529637 LRRC24Q50LG9 513 aa16.5■□□□□ 0.23
USP48-213ENST00000529637 TAF7LQ5H9L4 462 aa16.5■□□□□ 0.23
USP48-213ENST00000529637 CERS3Q8IU89 383 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms