RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 FAM187AA6NFU0 413 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 PTCD1O75127 700 aaKnown RBP5.47□□□□□ -1.53
CD44-226ENST00000527889 MTHFSP49914 203 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 LAPTM4AQ15012 233 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 WDR43Q15061 677 aaKnown RBP eCLIP5.47□□□□□ -1.53
CD44-226ENST00000527889 BPHLQ86WA6 291 aaPredicted RBP5.47□□□□□ -1.53
CD44-226ENST00000527889 CYP4X1Q8N118 509 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 SREK1Q8WXA9 508 aaKnown RBP5.47□□□□□ -1.53
CD44-226ENST00000527889 COL26A1Q96A83 441 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 SLC10A4Q96EP9 437 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 C1QTNF2Q9BXJ5 285 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 COL18A1P39060 1754 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 ZBED9Q6R2W3 1325 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 ROBO1Q9Y6N7 1651 aa5.47□□□□□ -1.53
CD44-226ENST00000527889 C1orf167Q5SNV9 1468 aa5.46□□□□□ -1.53
CD44-226ENST00000527889 TTC24A2A3L6 582 aaPredicted RBP5.46□□□□□ -1.54
CD44-226ENST00000527889 NPR3P17342 541 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 VARSP26640 1264 aaKnown RBP5.46□□□□□ -1.54
CD44-226ENST00000527889 ZC3H6P61129 1189 aaKnown RBP5.46□□□□□ -1.54
CD44-226ENST00000527889 NBPF20Q3BBV1 942 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 EAPPQ56P03 285 aaPredicted RBP5.46□□□□□ -1.54
CD44-226ENST00000527889 ESCO1Q5FWF5 840 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 Q6ZNB5 142 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 DEFB132Q7Z7B7 95 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 CCDC146Q8IYE0 955 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 SEPT12Q8IYM1 358 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 SERBP1Q8NC51 408 aaKnown RBP eCLIP5.46□□□□□ -1.54
CD44-226ENST00000527889 GAS2L2Q8NHY3 880 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 SNIP1Q8TAD8 396 aaKnown RBP5.46□□□□□ -1.54
CD44-226ENST00000527889 HELQQ8TDG4 1101 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 COG3Q96JB2 828 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 DRC1Q96MC2 740 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 ADAMTS8Q9UP79 889 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 MST1RQ04912 1400 aa5.46□□□□□ -1.54
CD44-226ENST00000527889 NFAT5O94916 1531 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 FAM208AQ9UK61 1670 aaKnown RBP5.45□□□□□ -1.54
CD44-226ENST00000527889 ALDH1A1P00352 501 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 XPCQ01831 940 aaPredicted RBP5.45□□□□□ -1.54
CD44-226ENST00000527889 RRS1Q15050 365 aaKnown RBP5.45□□□□□ -1.54
CD44-226ENST00000527889 AGERQ15109 404 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 TSNAXIP1Q2TAA8 658 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 NUTM2GQ5VZR2 741 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 CCDC125Q86Z20 511 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 FAM177A1Q8N128 213 aaPredicted RBP5.45□□□□□ -1.54
CD44-226ENST00000527889 CFAP53Q96M91 514 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 ORAI2Q96SN7 254 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 RBCK1Q9BYM8 510 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 EMILIN1Q9Y6C2 1016 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 DCCP43146 1447 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 SMG6Q86US8 1419 aaKnown RBP5.45□□□□□ -1.54
CD44-226ENST00000527889 PHLPP1O60346 1717 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 TTC21AQ8NDW8 1320 aa5.45□□□□□ -1.54
CD44-226ENST00000527889 INSRP06213 1382 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 MSH6P52701 1360 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 WNK3Q9BYP7 1800 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 PPM1GO15355 546 aaPredicted RBP5.44□□□□□ -1.54
CD44-226ENST00000527889 DGAT1O75907 488 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 P4HBP07237 508 aaKnown RBP5.44□□□□□ -1.54
CD44-226ENST00000527889 ATF3P18847 181 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 IGFBP4P22692 258 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 MRPL58Q14197 206 aaKnown RBP5.44□□□□□ -1.54
CD44-226ENST00000527889 NAA30Q147X3 362 aaPredicted RBP5.44□□□□□ -1.54
CD44-226ENST00000527889 TMC7Q7Z402 723 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 TRMT44Q8IYL2 757 aaKnown RBP5.44□□□□□ -1.54
CD44-226ENST00000527889 HPS1Q92902 700 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 BACH2Q9BYV9 841 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 C19orf44Q9H6X5 657 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 ZNF358Q9NW07 568 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 POLKQ9UBT6 870 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 SCN11AQ9UI33 1791 aa5.44□□□□□ -1.54
CD44-226ENST00000527889 SLIT3O75094 1523 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 USP31Q70CQ4 1352 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 JCADQ9P266 1359 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 NCOA3Q9Y6Q9 1424 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 SIPA1L3O60292 1781 aaPredicted RBP5.43□□□□□ -1.54
CD44-226ENST00000527889 TMEM229AB2RXF0 380 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 U2SURPO15042 1029 aaKnown RBP5.43□□□□□ -1.54
CD44-226ENST00000527889 ST8SIA5O15466 376 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 FOXO3O43524 673 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 FAM13AO94988 1023 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 AVPP01185 164 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 RBM6P78332 1123 aaKnown RBP5.43□□□□□ -1.54
CD44-226ENST00000527889 PKDCCQ504Y2 493 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 NAALADL2Q58DX5 795 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 LDLRAD1Q5T700 205 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 MPNDQ8N594 471 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 DDX17Q92841 729 aaKnown RBP5.43□□□□□ -1.54
CD44-226ENST00000527889 CDV3Q9UKY7 258 aaKnown RBP5.43□□□□□ -1.54
CD44-226ENST00000527889 CAMTA1Q9Y6Y1 1673 aa5.43□□□□□ -1.54
CD44-226ENST00000527889 AATKQ6ZMQ8 1374 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 PNPLA6Q8IY17 1366 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 APAF1O14727 1248 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 TREHO43280 583 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 DIAPH1O60610 1272 aaKnown RBP5.42□□□□□ -1.54
CD44-226ENST00000527889 MYCP01106 439 aaPredicted RBP5.42□□□□□ -1.54
CD44-226ENST00000527889 NR3C2P08235 984 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 U2AF1L5P0DN76 240 aaPredicted RBP5.42□□□□□ -1.54
CD44-226ENST00000527889 MPSTP25325 297 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 GRM5P41594 1212 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 SCTRP47872 440 aa5.42□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms