RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 ST5P78524 1137 aa10.98□□□□□ -0.65
USP48-212ENST00000527823 MAP2K1Q02750 393 aaPredicted RBP10.98□□□□□ -0.65
USP48-212ENST00000527823 FKBP4Q02790 459 aaKnown RBP eCLIP10.98□□□□□ -0.65
USP48-212ENST00000527823 MTHFSDQ2M296 383 aaKnown RBP10.98□□□□□ -0.65
USP48-212ENST00000527823 DEFB115Q30KQ5 88 aa10.98□□□□□ -0.65
USP48-212ENST00000527823 ZNF496Q96IT1 587 aaPredicted RBP10.98□□□□□ -0.65
USP48-212ENST00000527823 ABT1Q9ULW3 272 aaKnown RBP10.98□□□□□ -0.65
USP48-212ENST00000527823 CCDC85CA6NKD9 419 aa10.97□□□□□ -0.65
USP48-212ENST00000527823 STARD3NLO95772 234 aa10.97□□□□□ -0.65
USP48-212ENST00000527823 IL6STP40189 918 aaPredicted RBP10.97□□□□□ -0.65
USP48-212ENST00000527823 FMR1Q06787 632 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP48-212ENST00000527823 CNTROBQ8N137 903 aa10.97□□□□□ -0.65
USP48-212ENST00000527823 CAPNS2Q96L46 248 aa10.97□□□□□ -0.65
USP48-212ENST00000527823 PANK3Q9H999 370 aa10.97□□□□□ -0.65
USP48-212ENST00000527823 NUP98P52948 1817 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 ABCC12Q96J65 1359 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 FZD9O00144 591 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 GJA5P36382 358 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 MORC1Q86VD1 984 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 SCUBE3Q8IX30 993 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 TTC5Q8N0Z6 440 aa10.96□□□□□ -0.65
USP48-212ENST00000527823 DDX21Q9NR30 783 aaKnown RBP eCLIP10.96□□□□□ -0.65
USP48-212ENST00000527823 NPHP1O15259 732 aa10.95□□□□□ -0.66
USP48-212ENST00000527823 IARSP41252 1262 aaKnown RBP10.95□□□□□ -0.66
USP48-212ENST00000527823 QPCTQ16769 361 aa10.95□□□□□ -0.66
USP48-212ENST00000527823 CYP4F22Q6NT55 531 aa10.95□□□□□ -0.66
USP48-212ENST00000527823 ZNF790Q6PG37 636 aa10.95□□□□□ -0.66
USP48-212ENST00000527823 PNMA8AQ86V59 439 aaPredicted RBP10.95□□□□□ -0.66
USP48-212ENST00000527823 SYMPKQ92797 1274 aaKnown RBP10.95□□□□□ -0.66
USP48-212ENST00000527823 SETDB2Q96T68 719 aa10.95□□□□□ -0.66
USP48-212ENST00000527823 MTRQ99707 1265 aa10.95□□□□□ -0.66
USP48-212ENST00000527823 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP48-212ENST00000527823 RIC1Q4ADV7 1423 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 KLRG2A4D1S0 409 aaPredicted RBP10.94□□□□□ -0.66
USP48-212ENST00000527823 A1BGP04217 495 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 NPR1P16066 1061 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 SCNN1DP51172 638 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 SLC51AQ86UW1 340 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 DZIP3Q86Y13 1208 aaKnown RBP10.94□□□□□ -0.66
USP48-212ENST00000527823 GPC2Q8N158 579 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 LAMB2P55268 1798 aa10.94□□□□□ -0.66
USP48-212ENST00000527823 CEMIPQ8WUJ3 1361 aa10.93□□□□□ -0.66
USP48-212ENST00000527823 NR1I2O75469 434 aa10.93□□□□□ -0.66
USP48-212ENST00000527823 PIP4K2AP48426 406 aaPredicted RBP10.93□□□□□ -0.66
USP48-212ENST00000527823 GRM1Q13255 1194 aa10.93□□□□□ -0.66
USP48-212ENST00000527823 NBPF5PQ86XG9 351 aaPredicted RBP10.93□□□□□ -0.66
USP48-212ENST00000527823 MCOLN1Q9GZU1 580 aa10.93□□□□□ -0.66
USP48-212ENST00000527823 KDM3BQ7LBC6 1761 aa10.93□□□□□ -0.66
USP48-212ENST00000527823 C6orf229H3BNL8 230 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 TRAF5O00463 557 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 AOC2O75106 756 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 ECE1P42892 770 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 TUSC1Q2TAM9 212 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 RNF19BQ6ZMZ0 732 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 TLL2Q9Y6L7 1015 aa10.92□□□□□ -0.66
USP48-212ENST00000527823 PRAMEF22A3QJZ6 481 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 KCNQ3O43525 872 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 LILRB3O75022 631 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 TJAP1Q5JTD0 557 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 CST9Q5W186 159 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 RTKN2Q8IZC4 609 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 IL17REQ8NFR9 667 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 ZNF516Q92618 1163 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 GPR101Q96P66 508 aaPredicted RBP10.91□□□□□ -0.66
USP48-212ENST00000527823 FMNL2Q96PY5 1086 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 ZBTB3Q9H5J0 574 aa10.91□□□□□ -0.66
USP48-212ENST00000527823 EPS15P42566 896 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 TEFQ10587 303 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 MTMR2Q13614 643 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 Q3C1V9 767 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 RTL5Q5HYW3 569 aaPredicted RBP10.9□□□□□ -0.66
USP48-212ENST00000527823 SYNE4Q8N205 404 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 PSMD1Q99460 953 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 TEX13AQ9BXU3 409 aaPredicted RBP10.9□□□□□ -0.66
USP48-212ENST00000527823 GJA3Q9Y6H8 435 aa10.9□□□□□ -0.66
USP48-212ENST00000527823 ANKRD36CQ5JPF3 1778 aa10.9□□□□□ -0.67
USP48-212ENST00000527823 LRRC37AA6NMS7 1700 aa10.89□□□□□ -0.67
USP48-212ENST00000527823 LMOD1P29536 600 aaPredicted RBP10.89□□□□□ -0.67
USP48-212ENST00000527823 CRY2Q49AN0 593 aa10.89□□□□□ -0.67
USP48-212ENST00000527823 PRPF38BQ5VTL8 546 aaKnown RBP10.89□□□□□ -0.67
USP48-212ENST00000527823 IL21Q9HBE4 155 aa10.89□□□□□ -0.67
USP48-212ENST00000527823 GTF3C3Q9Y5Q9 886 aa10.89□□□□□ -0.67
USP48-212ENST00000527823 DLG5Q8TDM6 1919 aa10.89□□□□□ -0.67
USP48-212ENST00000527823 DUOX1Q9NRD9 1551 aa10.89□□□□□ -0.67
USP48-212ENST00000527823 AKAP11Q9UKA4 1901 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 GNAT3A8MTJ3 354 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 TLL1O43897 1013 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 HSPA5P11021 654 aaKnown RBP10.88□□□□□ -0.67
USP48-212ENST00000527823 BRICD5Q6PL45 260 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 CLEC4GQ6UXB4 293 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 SAPCD2Q86UD0 394 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 THAP11Q96EK4 314 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 NIP7Q9Y221 180 aaKnown RBP eCLIP10.88□□□□□ -0.67
USP48-212ENST00000527823 ZNF652Q9Y2D9 606 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 USP16Q9Y5T5 823 aa10.88□□□□□ -0.67
USP48-212ENST00000527823 DDX60Q8IY21 1712 aaKnown RBP10.87□□□□□ -0.67
USP48-212ENST00000527823 FAM177BA6PVY3 158 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 CA12O43570 354 aa10.87□□□□□ -0.67
USP48-212ENST00000527823 DIAPH1O60610 1272 aaKnown RBP10.87□□□□□ -0.67
USP48-212ENST00000527823 FMNL1O95466 1100 aaPredicted RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms