RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 IL1R1P14778 569 aa12.19□□□□□ -0.46
RNF4-221ENST00000513643 LMOD1P29536 600 aaPredicted RBP12.19□□□□□ -0.46
RNF4-221ENST00000513643 ZNF280AP59817 542 aaPredicted RBP12.19□□□□□ -0.46
RNF4-221ENST00000513643 UBE4AQ14139 1066 aa12.19□□□□□ -0.46
RNF4-221ENST00000513643 LRRC24Q50LG9 513 aa12.19□□□□□ -0.46
RNF4-221ENST00000513643 DACT2Q5SW24 774 aa12.19□□□□□ -0.46
RNF4-221ENST00000513643 STRIP1Q5VSL9 837 aa12.19□□□□□ -0.46
RNF4-221ENST00000513643 RSBN1LQ6PCB5 846 aaPredicted RBP12.19□□□□□ -0.46
RNF4-221ENST00000513643 ZC3H15Q8WU90 426 aaKnown RBP12.19□□□□□ -0.46
RNF4-221ENST00000513643 FBXO3Q9UK99 471 aa12.19□□□□□ -0.46
RNF4-221ENST00000513643 MROH5Q6ZUA9 1318 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 USP17L3A6NCW0 530 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 USP17L4A6NCW7 530 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 RLBP1P12271 317 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 USP17L1Q7RTZ2 530 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 ATG9AQ7Z3C6 839 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 TMEM57Q8N5G2 664 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 KLHDC4Q8TBB5 520 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 TRPM4Q8TD43 1214 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 FRAT1Q92837 279 aaPredicted RBP12.18□□□□□ -0.46
RNF4-221ENST00000513643 CD209Q9NNX6 404 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 HDAC5Q9UQL6 1122 aa12.18□□□□□ -0.46
RNF4-221ENST00000513643 LRRFIP2Q9Y608 721 aaKnown RBP12.18□□□□□ -0.46
RNF4-221ENST00000513643 EYA2O00167 538 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 ZBTB7BO15156 539 aaPredicted RBP12.17□□□□□ -0.46
RNF4-221ENST00000513643 ZBTB22O15209 634 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 CIAO1O76071 339 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 PDE8BO95263 885 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 EGFRP00533 1210 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 GNAI3P08754 354 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 FGFR2P21802 821 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 EAPPQ56P03 285 aaPredicted RBP12.17□□□□□ -0.46
RNF4-221ENST00000513643 TAF7LQ5H9L4 462 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 MICALL2Q8IY33 904 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 CNTROBQ8N137 903 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 FAM84BQ96KN1 310 aaPredicted RBP12.17□□□□□ -0.46
RNF4-221ENST00000513643 COPRSQ9NQ92 184 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 CNNM1Q9NRU3 951 aa12.17□□□□□ -0.46
RNF4-221ENST00000513643 H7C1D1 291 aa12.16□□□□□ -0.46
RNF4-221ENST00000513643 MMP14P50281 582 aa12.16□□□□□ -0.46
RNF4-221ENST00000513643 MAP1SQ66K74 1059 aaPredicted RBP12.16□□□□□ -0.46
RNF4-221ENST00000513643 FBXO33Q7Z6M2 555 aa12.16□□□□□ -0.46
RNF4-221ENST00000513643 TDRD7Q8NHU6 1098 aaKnown RBP12.16□□□□□ -0.46
RNF4-221ENST00000513643 CLUAP1Q96AJ1 413 aa12.16□□□□□ -0.46
RNF4-221ENST00000513643 ZNF646O15015 1829 aaPredicted RBP12.16□□□□□ -0.46
RNF4-221ENST00000513643 PSME4Q14997 1843 aa12.16□□□□□ -0.46
RNF4-221ENST00000513643 SPEF2Q9C093 1822 aa12.16□□□□□ -0.46
RNF4-221ENST00000513643 A0A1B0GUL6 1792 aa12.15□□□□□ -0.46
RNF4-221ENST00000513643 SASH1O94885 1247 aa12.15□□□□□ -0.46
RNF4-221ENST00000513643 FKBP1AP62942 108 aaKnown RBP12.15□□□□□ -0.46
RNF4-221ENST00000513643 TTLL5Q6EMB2 1281 aa12.15□□□□□ -0.46
RNF4-221ENST00000513643 SAMD7Q7Z3H4 446 aa12.15□□□□□ -0.46
RNF4-221ENST00000513643 DZIP1LQ8IYY4 767 aaKnown RBP12.15□□□□□ -0.46
RNF4-221ENST00000513643 ZBED3Q96IU2 234 aaPredicted RBP12.15□□□□□ -0.46
RNF4-221ENST00000513643 FAM205AQ6ZU69 1335 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 G3V3G9 751 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 GNAI2P04899 355 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 USP17L8P0C7I0 530 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 KCNJ4P48050 445 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 HTRA3P83110 453 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 DCAF8Q5TAQ9 597 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 CERS5Q8N5B7 392 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 MXD3Q9BW11 206 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 CREBZFQ9NS37 354 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 CLEC11AQ9Y240 323 aa12.14□□□□□ -0.47
RNF4-221ENST00000513643 MYO3BQ8WXR4 1341 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 PLIN1O60240 522 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 GTF2IP78347 998 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 POLA2Q14181 598 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 METTL24Q5JXM2 366 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 CST9Q5W186 159 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 ZNF804AQ7Z570 1209 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 RCAN3Q9UKA8 241 aa12.13□□□□□ -0.47
RNF4-221ENST00000513643 PNMA6EA0A0J9YXQ4 647 aa12.12□□□□□ -0.47
RNF4-221ENST00000513643 HIBADHP31937 336 aaKnown RBP12.12□□□□□ -0.47
RNF4-221ENST00000513643 IL15P40933 162 aaPredicted RBP12.12□□□□□ -0.47
RNF4-221ENST00000513643 GYG1P46976 350 aa12.12□□□□□ -0.47
RNF4-221ENST00000513643 FMR1Q06787 632 aaKnown RBP eCLIP12.12□□□□□ -0.47
RNF4-221ENST00000513643 PUM3Q15397 648 aaKnown RBP12.12□□□□□ -0.47
RNF4-221ENST00000513643 TBC1D10BQ4KMP7 808 aaPredicted RBP12.12□□□□□ -0.47
RNF4-221ENST00000513643 CDC37L1Q7L3B6 337 aa12.12□□□□□ -0.47
RNF4-221ENST00000513643 JMYQ8N9B5 988 aa12.12□□□□□ -0.47
RNF4-221ENST00000513643 KLRG1Q96E93 195 aa12.12□□□□□ -0.47
RNF4-221ENST00000513643 MYOZ2Q9NPC6 264 aa12.12□□□□□ -0.47
RNF4-221ENST00000513643 PA2G4Q9UQ80 394 aaKnown RBP12.12□□□□□ -0.47
RNF4-221ENST00000513643 TMEM88BA6NKF7 163 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 TRAF5O00463 557 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 SRGAP3O43295 1099 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 ATP8B2P98198 1209 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 KIF4BQ2VIQ3 1234 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 MTMR14Q8NCE2 650 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 SSH3Q8TE77 659 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 LPIN2Q92539 896 aa12.11□□□□□ -0.47
RNF4-221ENST00000513643 ASTN2O75129 1339 aaPredicted RBP12.11□□□□□ -0.47
RNF4-221ENST00000513643 SCARF1Q14162 830 aa12.1□□□□□ -0.47
RNF4-221ENST00000513643 PANK1Q8TE04 598 aa12.1□□□□□ -0.47
RNF4-221ENST00000513643 GLIS2Q9BZE0 524 aaPredicted RBP12.1□□□□□ -0.47
RNF4-221ENST00000513643 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.1□□□□□ -0.47
RNF4-221ENST00000513643 PITPNM2Q9BZ72 1349 aa12.1□□□□□ -0.47
RNF4-221ENST00000513643 RASSF10A6NK89 507 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms