RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 SCN9AQ15858 1988 aa22.74■■□□□ 1.23
SQSTM1-209ENST00000504627 TRPM7Q96QT4 1865 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 ALDH1L1O75891 902 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 FOXO4P98177 505 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 CYP4F22Q6NT55 531 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 KRT26Q7Z3Y9 468 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 CAPNS2Q96L46 248 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 COA1Q9GZY4 146 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 ZNF804BA4D1E1 1349 aa22.73■■□□□ 1.23
SQSTM1-209ENST00000504627 FOXN1O15353 648 aa22.72■■□□□ 1.23
SQSTM1-209ENST00000504627 CHRNDQ07001 517 aa22.72■■□□□ 1.23
SQSTM1-209ENST00000504627 TAF7LQ5H9L4 462 aa22.72■■□□□ 1.23
SQSTM1-209ENST00000504627 LMBR1LQ6UX01 489 aa22.72■■□□□ 1.23
SQSTM1-209ENST00000504627 USP17L8P0C7I0 530 aa22.71■■□□□ 1.23
SQSTM1-209ENST00000504627 MAP2K1Q02750 393 aaPredicted RBP22.71■■□□□ 1.23
SQSTM1-209ENST00000504627 CCDC57Q2TAC2 916 aa22.71■■□□□ 1.23
SQSTM1-209ENST00000504627 SAPCD2Q86UD0 394 aa22.71■■□□□ 1.23
SQSTM1-209ENST00000504627 TNS4Q8IZW8 715 aa22.71■■□□□ 1.23
SQSTM1-209ENST00000504627 MRPL50Q8N5N7 158 aaKnown RBP22.7■■□□□ 1.22
SQSTM1-209ENST00000504627 WBP1LQ9NX94 342 aa22.7■■□□□ 1.22
SQSTM1-209ENST00000504627 GGA3Q9NZ52 723 aa22.7■■□□□ 1.22
SQSTM1-209ENST00000504627 CTCFP49711 727 aaPredicted RBP22.69■■□□□ 1.22
SQSTM1-209ENST00000504627 ZNF280AP59817 542 aaPredicted RBP22.69■■□□□ 1.22
SQSTM1-209ENST00000504627 TXNRD3Q86VQ6 643 aa22.69■■□□□ 1.22
SQSTM1-209ENST00000504627 SULF1Q8IWU6 871 aa22.69■■□□□ 1.22
SQSTM1-209ENST00000504627 ADM5C9JUS6 153 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 SCARF1Q14162 830 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 EPHA10Q5JZY3 1008 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 DLK2Q6UY11 383 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 GMLQ99445 158 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 BEGAINQ9BUH8 593 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 MYOZ2Q9NPC6 264 aa22.68■■□□□ 1.22
SQSTM1-209ENST00000504627 ZNF609O15014 1411 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 TAF5LO75529 589 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 CT47B1P0C2W7 299 aaPredicted RBP22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 KLRK1P26718 216 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 DACT2Q5SW24 774 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 STRIP1Q5VSL9 837 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 LDHAL6AQ6ZMR3 332 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 OGFOD1Q8N543 542 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 HELBQ8NG08 1087 aaPredicted RBP22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 HHIPL1Q96JK4 782 aa22.67■■□□□ 1.22
SQSTM1-209ENST00000504627 PTPRCP08575 1304 aa22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 MYO3BQ8WXR4 1341 aa22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 ANGEL2Q5VTE6 544 aaKnown RBP22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 TTLL5Q6EMB2 1281 aa22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 SSH1Q8WYL5 1049 aa22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 ZNF594Q96JF6 807 aaPredicted RBP22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 MXD3Q9BW11 206 aa22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 CNNM1Q9NRU3 951 aa22.66■■□□□ 1.22
SQSTM1-209ENST00000504627 ASTN2O75129 1339 aaPredicted RBP22.65■■□□□ 1.22
SQSTM1-209ENST00000504627 HUNKP57058 714 aa22.65■■□□□ 1.22
SQSTM1-209ENST00000504627 C2orf69Q8N8R5 385 aa22.65■■□□□ 1.22
SQSTM1-209ENST00000504627 SUCLG2Q96I99 432 aa22.65■■□□□ 1.22
SQSTM1-209ENST00000504627 PSME4Q14997 1843 aa22.64■■□□□ 1.22
SQSTM1-209ENST00000504627 SNAP23O00161 211 aa22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 PLIN1O60240 522 aa22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 AOC2O75106 756 aa22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 MAP2K2P36507 400 aa22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 GTF2IP78347 998 aa22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 GBA2Q9HCG7 927 aaPredicted RBP22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 RCAN3Q9UKA8 241 aa22.64■■□□□ 1.21
SQSTM1-209ENST00000504627 NBPF7P0C2Y1 421 aaPredicted RBP22.63■■□□□ 1.21
SQSTM1-209ENST00000504627 CD209Q9NNX6 404 aa22.63■■□□□ 1.21
SQSTM1-209ENST00000504627 PRDM10Q9NQV6 1147 aa22.63■■□□□ 1.21
SQSTM1-209ENST00000504627 POLR2AP24928 1970 aaKnown RBP22.63■■□□□ 1.21
SQSTM1-209ENST00000504627 LBX1P52954 281 aa22.62■■□□□ 1.21
SQSTM1-209ENST00000504627 ZNF804AQ7Z570 1209 aa22.62■■□□□ 1.21
SQSTM1-209ENST00000504627 HDAC9Q9UKV0 1011 aa22.62■■□□□ 1.21
SQSTM1-209ENST00000504627 ALDH1L2Q3SY69 923 aa22.61■■□□□ 1.21
SQSTM1-209ENST00000504627 CDCA5Q96FF9 252 aa22.61■■□□□ 1.21
SQSTM1-209ENST00000504627 SMC4Q9NTJ3 1288 aa22.61■■□□□ 1.21
SQSTM1-209ENST00000504627 UTYO14607 1347 aa22.6■■□□□ 1.21
SQSTM1-209ENST00000504627 MMP14P50281 582 aa22.6■■□□□ 1.21
SQSTM1-209ENST00000504627 C15orf52Q6ZUT6 534 aaKnown RBP22.6■■□□□ 1.21
SQSTM1-209ENST00000504627 KIAA0825Q8IV33 1275 aa22.6■■□□□ 1.21
SQSTM1-209ENST00000504627 BICC1Q9H694 974 aaKnown RBP22.6■■□□□ 1.21
SQSTM1-209ENST00000504627 PITPNM2Q9BZ72 1349 aa22.59■■□□□ 1.21
SQSTM1-209ENST00000504627 CAPN15O75808 1086 aa22.59■■□□□ 1.21
SQSTM1-209ENST00000504627 HSPA8P11142 646 aaKnown RBP22.59■■□□□ 1.21
SQSTM1-209ENST00000504627 NBPF9Q3BBW0 867 aa22.59■■□□□ 1.21
SQSTM1-209ENST00000504627 RGMBQ6NW40 437 aa22.59■■□□□ 1.21
SQSTM1-209ENST00000504627 KAZALD1Q96I82 304 aa22.59■■□□□ 1.21
SQSTM1-209ENST00000504627 NOGQ13253 232 aa22.58■■□□□ 1.21
SQSTM1-209ENST00000504627 WNT10BO00744 389 aa22.57■■□□□ 1.2
SQSTM1-209ENST00000504627 PUS3Q9BZE2 481 aaKnown RBP22.57■■□□□ 1.2
SQSTM1-209ENST00000504627 SCAF8Q9UPN6 1271 aaKnown RBP22.57■■□□□ 1.2
SQSTM1-209ENST00000504627 THSD7BQ9C0I4 1608 aa22.57■■□□□ 1.2
SQSTM1-209ENST00000504627 IRS2Q9Y4H2 1338 aa22.57■■□□□ 1.2
SQSTM1-209ENST00000504627 ZNF157P51786 506 aaPredicted RBP22.56■■□□□ 1.2
SQSTM1-209ENST00000504627 SUPT16HQ9Y5B9 1047 aaKnown RBP22.56■■□□□ 1.2
SQSTM1-209ENST00000504627 SASH1O94885 1247 aa22.55■■□□□ 1.2
SQSTM1-209ENST00000504627 IL1R1P14778 569 aa22.55■■□□□ 1.2
SQSTM1-209ENST00000504627 BRPF1P55201 1214 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-209ENST00000504627 UBE4AQ14139 1066 aa22.55■■□□□ 1.2
SQSTM1-209ENST00000504627 RABL6Q3YEC7 729 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-209ENST00000504627 CCDC102AQ96A19 550 aa22.55■■□□□ 1.2
SQSTM1-209ENST00000504627 USP44Q9H0E7 712 aa22.54■■□□□ 1.2
SQSTM1-209ENST00000504627 MROH5Q6ZUA9 1318 aa22.54■■□□□ 1.2
SQSTM1-209ENST00000504627 F8W031 263 aaPredicted RBP22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms