RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 DOK7Q18PE1 504 aa10.76□□□□□ -0.69
USP54-211ENST00000474929 HSP90AB3PQ58FF7 597 aa10.76□□□□□ -0.69
USP54-211ENST00000474929 HELBQ8NG08 1087 aaPredicted RBP10.76□□□□□ -0.69
USP54-211ENST00000474929 DIAPH1O60610 1272 aaKnown RBP10.75□□□□□ -0.69
USP54-211ENST00000474929 IREB2P48200 963 aaKnown RBP10.75□□□□□ -0.69
USP54-211ENST00000474929 BCAMP50895 628 aa10.75□□□□□ -0.69
USP54-211ENST00000474929 ZBTB3Q9H5J0 574 aa10.75□□□□□ -0.69
USP54-211ENST00000474929 ZCCHC17Q9NP64 241 aaKnown RBP10.75□□□□□ -0.69
USP54-211ENST00000474929 SYNGAP1Q96PV0 1343 aa10.75□□□□□ -0.69
USP54-211ENST00000474929 KCNQ3O43525 872 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 GRK4P32298 578 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 LACTBP83111 547 aaPredicted RBP10.74□□□□□ -0.69
USP54-211ENST00000474929 PRKG1Q13976 671 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 PRAMEF18Q5VWM3 479 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 RTF1Q92541 710 aaKnown RBP10.74□□□□□ -0.69
USP54-211ENST00000474929 TRIM47Q96LD4 638 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 GMLQ99445 158 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 RNF208Q9H0X6 261 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 POLLQ9UGP5 575 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 SH3TC1Q8TE82 1336 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 IRS2Q9Y4H2 1338 aa10.74□□□□□ -0.69
USP54-211ENST00000474929 TMEM265A0A087WTH1 108 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 USP17L3A6NCW0 530 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 USP17L4A6NCW7 530 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 WNT10BO00744 389 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 CCL5P13501 91 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 USP17L1Q7RTZ2 530 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 PODNQ7Z5L7 613 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 ANKRD13AQ8IZ07 590 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 NGEFQ8N5V2 710 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 TBC1D16Q8TBP0 767 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 RAET1EQ8TD07 263 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 U2AF1L4Q8WU68 220 aaKnown RBP10.73□□□□□ -0.69
USP54-211ENST00000474929 PODXL2Q9NZ53 605 aa10.73□□□□□ -0.69
USP54-211ENST00000474929 PIEZO1Q92508 2521 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 MTFR1Q15390 333 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 NBPF9Q3BBW0 867 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 SUPT20HL1Q3ZLR7 823 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 TJAP1Q5JTD0 557 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 ZNF697Q5TEC3 545 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 MAFAQ8NHW3 353 aaPredicted RBP10.72□□□□□ -0.69
USP54-211ENST00000474929 KCNQ5Q9NR82 932 aa10.72□□□□□ -0.69
USP54-211ENST00000474929 TLR2O60603 784 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 UFL1O94874 794 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 GTF2A2P52657 109 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 GPSM2P81274 684 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 CAP1Q01518 475 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 MUC3AQ02505 3323 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 TTLL7Q6ZT98 887 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 SLAIN1Q8ND83 568 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 GUCD1Q96NT3 240 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 UBE2OQ9C0C9 1292 aaKnown RBP10.71□□□□□ -0.69
USP54-211ENST00000474929 BIN2Q9UBW5 565 aaPredicted RBP10.71□□□□□ -0.69
USP54-211ENST00000474929 SRRDQ9UH36 339 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 GGA1Q9UJY5 639 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 RIPOR2Q9Y4F9 1068 aa10.71□□□□□ -0.69
USP54-211ENST00000474929 COL2A1P02458 1487 aaPredicted RBP10.7□□□□□ -0.7
USP54-211ENST00000474929 SGPL1O95470 568 aa10.7□□□□□ -0.7
USP54-211ENST00000474929 NECAB2Q7Z6G3 386 aa10.7□□□□□ -0.7
USP54-211ENST00000474929 PNISRQ8TF01 805 aaKnown RBP10.7□□□□□ -0.7
USP54-211ENST00000474929 SNX27Q96L92 541 aa10.7□□□□□ -0.7
USP54-211ENST00000474929 PTPN18Q99952 460 aa10.7□□□□□ -0.7
USP54-211ENST00000474929 TRMT112Q9UI30 125 aaKnown RBP10.7□□□□□ -0.7
USP54-211ENST00000474929 HCN4Q9Y3Q4 1203 aa10.7□□□□□ -0.7
USP54-211ENST00000474929 ADGRA2Q96PE1 1338 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 POTEB2H3BUK9 544 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 HCLS1P14317 486 aaPredicted RBP10.69□□□□□ -0.7
USP54-211ENST00000474929 MAP3K12Q12852 859 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 ANKLE1Q8NAG6 615 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 CLMNQ96JQ2 1002 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 DEFB129Q9H1M3 183 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 ANKIB1Q9P2G1 1089 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 SCAF8Q9UPN6 1271 aaKnown RBP10.69□□□□□ -0.7
USP54-211ENST00000474929 RRP7AQ9Y3A4 280 aaKnown RBP10.69□□□□□ -0.7
USP54-211ENST00000474929 KNSTRNQ9Y448 316 aa10.69□□□□□ -0.7
USP54-211ENST00000474929 MYPNQ86TC9 1320 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 CCL15-CCL14A0A0B4J2E2 113 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 HTATSF1O43719 755 aaKnown RBP10.68□□□□□ -0.7
USP54-211ENST00000474929 MYO1BO43795 1136 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 HSP90B1P14625 803 aaKnown RBP10.68□□□□□ -0.7
USP54-211ENST00000474929 MYL6BP14649 208 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 MAGEA10P43363 369 aaPredicted RBP10.68□□□□□ -0.7
USP54-211ENST00000474929 CCL15Q16663 113 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 C7orf61Q8IZ16 206 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 CNKSR2Q8WXI2 1034 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 OPTNQ96CV9 577 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 ECM29Q5VYK3 1845 aa10.68□□□□□ -0.7
USP54-211ENST00000474929 ZNF804BA4D1E1 1349 aa10.67□□□□□ -0.7
USP54-211ENST00000474929 SASH1O94885 1247 aa10.67□□□□□ -0.7
USP54-211ENST00000474929 EIF4G2P78344 907 aaKnown RBP eCLIP10.67□□□□□ -0.7
USP54-211ENST00000474929 SF3B3Q15393 1217 aaKnown RBP10.67□□□□□ -0.7
USP54-211ENST00000474929 CELF1Q92879 486 aaKnown RBP10.67□□□□□ -0.7
USP54-211ENST00000474929 MS4A4AQ96JQ5 239 aa10.67□□□□□ -0.7
USP54-211ENST00000474929 POLR3GLQ9BT43 218 aa10.67□□□□□ -0.7
USP54-211ENST00000474929 C1QTNF1Q9BXJ1 281 aa10.67□□□□□ -0.7
USP54-211ENST00000474929 PANK3Q9H999 370 aa10.67□□□□□ -0.7
USP54-211ENST00000474929 ALPK3Q96L96 1907 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 XDHP47989 1333 aa10.66□□□□□ -0.7
USP54-211ENST00000474929 TFRCP02786 760 aaKnown RBP10.66□□□□□ -0.7
USP54-211ENST00000474929 GJA5P36382 358 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms