RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 VGLL2Q8N8G2 317 aa19.02■□□□□ 0.64
SDC3-203ENST00000471567 HACL1Q9UJ83 578 aa19.02■□□□□ 0.64
SDC3-203ENST00000471567 PNMA6EA0A0J9YXQ4 647 aa19.01■□□□□ 0.63
SDC3-203ENST00000471567 TOMM70O94826 608 aa19.01■□□□□ 0.63
SDC3-203ENST00000471567 KLRK1P26718 216 aa19.01■□□□□ 0.63
SDC3-203ENST00000471567 PA2G4Q9UQ80 394 aaKnown RBP19.01■□□□□ 0.63
SDC3-203ENST00000471567 SCN4AP35499 1836 aa19.01■□□□□ 0.63
SDC3-203ENST00000471567 PSMD14O00487 310 aa19■□□□□ 0.63
SDC3-203ENST00000471567 VIL1P09327 827 aaKnown RBP19■□□□□ 0.63
SDC3-203ENST00000471567 LMOD1P29536 600 aaPredicted RBP19■□□□□ 0.63
SDC3-203ENST00000471567 POLA2Q14181 598 aa19■□□□□ 0.63
SDC3-203ENST00000471567 C20orf194Q5TEA3 1177 aa19■□□□□ 0.63
SDC3-203ENST00000471567 ZNF804AQ7Z570 1209 aa19■□□□□ 0.63
SDC3-203ENST00000471567 SSH3Q8TE77 659 aa19■□□□□ 0.63
SDC3-203ENST00000471567 SIL1Q9H173 461 aa19■□□□□ 0.63
SDC3-203ENST00000471567 TAF1DQ9H5J8 278 aaPredicted RBP19■□□□□ 0.63
SDC3-203ENST00000471567 C1orf115Q9H7X2 142 aa19■□□□□ 0.63
SDC3-203ENST00000471567 KCNQ5Q9NR82 932 aa19■□□□□ 0.63
SDC3-203ENST00000471567 ZBTB40Q9NUA8 1239 aa19■□□□□ 0.63
SDC3-203ENST00000471567 CEP126Q9P2H0 1117 aa19■□□□□ 0.63
SDC3-203ENST00000471567 USP17L3A6NCW0 530 aa18.99■□□□□ 0.63
SDC3-203ENST00000471567 USP17L4A6NCW7 530 aa18.99■□□□□ 0.63
SDC3-203ENST00000471567 RPS12P25398 132 aaKnown RBP18.99■□□□□ 0.63
SDC3-203ENST00000471567 GMPSP49915 693 aaPredicted RBP18.99■□□□□ 0.63
SDC3-203ENST00000471567 SCNN1DP51172 638 aa18.99■□□□□ 0.63
SDC3-203ENST00000471567 RRP1P56182 461 aaKnown RBP18.99■□□□□ 0.63
SDC3-203ENST00000471567 PUM3Q15397 648 aaKnown RBP18.99■□□□□ 0.63
SDC3-203ENST00000471567 USP17L1Q7RTZ2 530 aa18.99■□□□□ 0.63
SDC3-203ENST00000471567 RBM46Q8TBY0 533 aaKnown RBP18.99■□□□□ 0.63
SDC3-203ENST00000471567 DPF2Q92785 391 aa18.99■□□□□ 0.63
SDC3-203ENST00000471567 CD209Q9NNX6 404 aa18.99■□□□□ 0.63
SDC3-203ENST00000471567 FGFR2P21802 821 aa18.98■□□□□ 0.63
SDC3-203ENST00000471567 EPHX2P34913 555 aa18.98■□□□□ 0.63
SDC3-203ENST00000471567 GPRC5DQ9NZD1 345 aa18.98■□□□□ 0.63
SDC3-203ENST00000471567 IFIT1P09914 478 aaKnown RBP18.97■□□□□ 0.63
SDC3-203ENST00000471567 IL1R1P14778 569 aa18.97■□□□□ 0.63
SDC3-203ENST00000471567 STRIP1Q5VSL9 837 aa18.97■□□□□ 0.63
SDC3-203ENST00000471567 CEP85Q6P2H3 762 aa18.97■□□□□ 0.63
SDC3-203ENST00000471567 PNMA8AQ86V59 439 aaPredicted RBP18.97■□□□□ 0.63
SDC3-203ENST00000471567 LPIN2Q92539 896 aa18.97■□□□□ 0.63
SDC3-203ENST00000471567 SCN9AQ15858 1988 aa18.97■□□□□ 0.63
SDC3-203ENST00000471567 HIBADHP31937 336 aaKnown RBP18.96■□□□□ 0.63
SDC3-203ENST00000471567 EPS15P42566 896 aa18.96■□□□□ 0.63
SDC3-203ENST00000471567 C1QTNF8P60827 252 aa18.96■□□□□ 0.63
SDC3-203ENST00000471567 G3BP1Q13283 466 aaKnown RBP eCLIP18.96■□□□□ 0.63
SDC3-203ENST00000471567 RSBN1LQ6PCB5 846 aaPredicted RBP18.96■□□□□ 0.63
SDC3-203ENST00000471567 RPAP2Q8IXW5 612 aaPredicted RBP18.96■□□□□ 0.63
SDC3-203ENST00000471567 AGBL3Q8NEM8 1001 aa18.96■□□□□ 0.63
SDC3-203ENST00000471567 FAM84BQ96KN1 310 aaPredicted RBP18.96■□□□□ 0.63
SDC3-203ENST00000471567 ZNF609O15014 1411 aa18.96■□□□□ 0.63
SDC3-203ENST00000471567 SLC5A1P13866 664 aa18.95■□□□□ 0.62
SDC3-203ENST00000471567 CAVIN4Q5BKX8 364 aa18.95■□□□□ 0.62
SDC3-203ENST00000471567 TTLL5Q6EMB2 1281 aa18.95■□□□□ 0.62
SDC3-203ENST00000471567 FBXO33Q7Z6M2 555 aa18.95■□□□□ 0.62
SDC3-203ENST00000471567 ADARB2Q9NS39 739 aaKnown RBP18.95■□□□□ 0.62
SDC3-203ENST00000471567 CNOT7Q9UIV1 285 aaKnown RBP18.95■□□□□ 0.62
SDC3-203ENST00000471567 ZBTB12Q9Y330 459 aaPredicted RBP18.95■□□□□ 0.62
SDC3-203ENST00000471567 H7C1D1 291 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 GYG1P46976 350 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 FSTL1Q12841 308 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 ATP2B3Q16720 1220 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 DACT2Q5SW24 774 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 USP50Q70EL3 339 aaPredicted RBP18.94■□□□□ 0.62
SDC3-203ENST00000471567 SMC1BQ8NDV3 1235 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 TDRD7Q8NHU6 1098 aaKnown RBP18.94■□□□□ 0.62
SDC3-203ENST00000471567 AKAP2Q9Y2D5 859 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 NOP58Q9Y2X3 529 aaKnown RBP18.94■□□□□ 0.62
SDC3-203ENST00000471567 PSME4Q14997 1843 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 MYO3BQ8WXR4 1341 aa18.94■□□□□ 0.62
SDC3-203ENST00000471567 SASH1O94885 1247 aa18.93■□□□□ 0.62
SDC3-203ENST00000471567 GTF2IP78347 998 aa18.93■□□□□ 0.62
SDC3-203ENST00000471567 LDHDQ86WU2 507 aa18.93■□□□□ 0.62
SDC3-203ENST00000471567 VPS37DQ86XT2 251 aa18.93■□□□□ 0.62
SDC3-203ENST00000471567 MICALL2Q8IY33 904 aa18.93■□□□□ 0.62
SDC3-203ENST00000471567 GMLQ99445 158 aa18.93■□□□□ 0.62
SDC3-203ENST00000471567 HMMRO75330 724 aa18.92■□□□□ 0.62
SDC3-203ENST00000471567 SURF6O75683 361 aaKnown RBP18.92■□□□□ 0.62
SDC3-203ENST00000471567 MMP14P50281 582 aa18.92■□□□□ 0.62
SDC3-203ENST00000471567 FKBP1AP62942 108 aaKnown RBP18.92■□□□□ 0.62
SDC3-203ENST00000471567 TFCP2Q12800 502 aa18.92■□□□□ 0.62
SDC3-203ENST00000471567 EAPPQ56P03 285 aaPredicted RBP18.92■□□□□ 0.62
SDC3-203ENST00000471567 CHADLQ6NUI6 762 aa18.91■□□□□ 0.62
SDC3-203ENST00000471567 FBXW7Q969H0 707 aa18.91■□□□□ 0.62
SDC3-203ENST00000471567 FAM205AQ6ZU69 1335 aa18.91■□□□□ 0.62
SDC3-203ENST00000471567 USP17L8P0C7I0 530 aa18.9■□□□□ 0.62
SDC3-203ENST00000471567 BCAMP50895 628 aa18.9■□□□□ 0.62
SDC3-203ENST00000471567 ZNF280AP59817 542 aaPredicted RBP18.9■□□□□ 0.62
SDC3-203ENST00000471567 OS9Q13438 667 aaPredicted RBP18.9■□□□□ 0.62
SDC3-203ENST00000471567 ZBTB22O15209 634 aa18.89■□□□□ 0.61
SDC3-203ENST00000471567 POTEIP0CG38 1075 aa18.89■□□□□ 0.61
SDC3-203ENST00000471567 POTEJP0CG39 1038 aa18.89■□□□□ 0.61
SDC3-203ENST00000471567 HSP90AB4PQ58FF6 505 aa18.89■□□□□ 0.61
SDC3-203ENST00000471567 GPR108Q9NPR9 543 aa18.89■□□□□ 0.61
SDC3-203ENST00000471567 CLEC11AQ9Y240 323 aa18.89■□□□□ 0.61
SDC3-203ENST00000471567 A0A1B0GUL7 405 aa18.88■□□□□ 0.61
SDC3-203ENST00000471567 SHTN1A0MZ66 631 aa18.88■□□□□ 0.61
SDC3-203ENST00000471567 TIMM10P62072 90 aa18.88■□□□□ 0.61
SDC3-203ENST00000471567 SIRT2Q8IXJ6 389 aa18.88■□□□□ 0.61
SDC3-203ENST00000471567 ZC3H15Q8WU90 426 aaKnown RBP18.88■□□□□ 0.61
SDC3-203ENST00000471567 MXD3Q9BW11 206 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms