RNA–Protein interactions for RNA: ENST00000469356.3

SREBF1-208, Transcript of sterol regulatory element binding transcription factor 1, human

TSL 3

Gene SREBF1, Length 1,323 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SREBF1-208	ENST00000469356	LRRCC1	Q9C099	1032 aa		28.27	■■■□□ 2.12
SREBF1-208	ENST00000469356	FGFR2	P21802	821 aa		28.26	■■■□□ 2.11
SREBF1-208	ENST00000469356	AOC3	Q16853	763 aa		28.26	■■■□□ 2.11
SREBF1-208	ENST00000469356	ZNF804A	Q7Z570	1209 aa		28.26	■■■□□ 2.11
SREBF1-208	ENST00000469356	RNF181	Q9P0P0	153 aa		28.26	■■■□□ 2.11
SREBF1-208	ENST00000469356	DUOX1	Q9NRD9	1551 aa		28.26	■■■□□ 2.11
SREBF1-208	ENST00000469356	DICER1	Q9UPY3	1922 aa	Known RBP	28.25	■■■□□ 2.11
SREBF1-208	ENST00000469356	APBB1	O00213	710 aa		28.25	■■■□□ 2.11
SREBF1-208	ENST00000469356	VPS37D	Q86XT2	251 aa		28.25	■■■□□ 2.11
SREBF1-208	ENST00000469356	C9orf131	Q5VYM1	1079 aa		28.24	■■■□□ 2.11
SREBF1-208	ENST00000469356	NEUROD6	Q96NK8	337 aa		28.24	■■■□□ 2.11
SREBF1-208	ENST00000469356	COA1	Q9GZY4	146 aa		28.24	■■■□□ 2.11
SREBF1-208	ENST00000469356	CHD4	Q14839	1912 aa		28.24	■■■□□ 2.11
SREBF1-208	ENST00000469356		A0A1B0GUL7	405 aa		28.23	■■■□□ 2.11
SREBF1-208	ENST00000469356	TNNI3K	Q59H18	835 aa		28.23	■■■□□ 2.11
SREBF1-208	ENST00000469356	GORAB	Q5T7V8	394 aa		28.23	■■■□□ 2.11
SREBF1-208	ENST00000469356	FPGT-TNNI3K	V9GXZ4	949 aa		28.23	■■■□□ 2.11
SREBF1-208	ENST00000469356	GPR101	Q96P66	508 aa	Predicted RBP	28.22	■■■□□ 2.11
SREBF1-208	ENST00000469356	GNL3L	Q9NVN8	582 aa	Known RBP	28.22	■■■□□ 2.11
SREBF1-208	ENST00000469356	ZC3H4	Q9UPT8	1303 aa	Known RBP	28.21	■■■□□ 2.11
SREBF1-208	ENST00000469356	SNAP23	O00161	211 aa		28.21	■■■□□ 2.11
SREBF1-208	ENST00000469356	HIBADH	P31937	336 aa	Known RBP	28.21	■■■□□ 2.11
SREBF1-208	ENST00000469356	PODN	Q7Z5L7	613 aa		28.21	■■■□□ 2.11
SREBF1-208	ENST00000469356	TIMM10	P62072	90 aa		28.2	■■■□□ 2.11
SREBF1-208	ENST00000469356	ZNRF3	Q9ULT6	936 aa		28.2	■■■□□ 2.11
SREBF1-208	ENST00000469356	EIF6	P56537	245 aa	Known RBP	28.19	■■■□□ 2.1
SREBF1-208	ENST00000469356	SMC5	Q8IY18	1101 aa		28.19	■■■□□ 2.1
SREBF1-208	ENST00000469356	IL1RAPL2	Q9NP60	686 aa		28.19	■■■□□ 2.1
SREBF1-208	ENST00000469356	WTIP	A6NIX2	430 aa	Predicted RBP	28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	IGHD	P01880	384 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	IFIT2	P09913	472 aa	Known RBP	28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	DOK7	Q18PE1	504 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	AACS	Q86V21	672 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	XAGE2	Q96GT9	111 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	CCDC136	Q96JN2	1154 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	FAM84B	Q96KN1	310 aa	Predicted RBP	28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	ZNF609	O15014	1411 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	ECE2	O60344	883 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	FRAT2	O75474	233 aa	Predicted RBP	28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	CCDC158	Q5M9N0	1113 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	ANKRD45	Q5TZF3	282 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	FBXO33	Q7Z6M2	555 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	DBNDD1	Q9H9R9	158 aa		28.18	■■■□□ 2.1
SREBF1-208	ENST00000469356	IRS2	Q9Y4H2	1338 aa		28.17	■■■□□ 2.1
SREBF1-208	ENST00000469356	GYG1	P46976	350 aa		28.17	■■■□□ 2.1
SREBF1-208	ENST00000469356	TXNRD3	Q86VQ6	643 aa		28.17	■■■□□ 2.1
SREBF1-208	ENST00000469356	CD209	Q9NNX6	404 aa		28.17	■■■□□ 2.1
SREBF1-208	ENST00000469356	PPP4R2	Q9NY27	417 aa		28.17	■■■□□ 2.1
SREBF1-208	ENST00000469356	KLRK1	P26718	216 aa		28.16	■■■□□ 2.1
SREBF1-208	ENST00000469356	PRELP	P51888	382 aa		28.16	■■■□□ 2.1
SREBF1-208	ENST00000469356	DPY19L2	Q6NUT2	758 aa		28.16	■■■□□ 2.1
SREBF1-208	ENST00000469356	EAF2	Q96CJ1	260 aa	Predicted RBP	28.16	■■■□□ 2.1
SREBF1-208	ENST00000469356	FZD9	O00144	591 aa		28.15	■■■□□ 2.1
SREBF1-208	ENST00000469356	TNIP1	Q15025	636 aa		28.15	■■■□□ 2.1
SREBF1-208	ENST00000469356	BCL11A	Q9H165	835 aa		28.15	■■■□□ 2.1
SREBF1-208	ENST00000469356	ARAP2	Q8WZ64	1704 aa		28.14	■■■□□ 2.1
SREBF1-208	ENST00000469356	GOLGB1	Q14789	3259 aa	Known RBP	28.14	■■■□□ 2.1
SREBF1-208	ENST00000469356	IL1R1	P14778	569 aa		28.14	■■■□□ 2.09
SREBF1-208	ENST00000469356	BCAM	P50895	628 aa		28.14	■■■□□ 2.09
SREBF1-208	ENST00000469356	CCDC8	Q9H0W5	538 aa	Predicted RBP	28.14	■■■□□ 2.09
SREBF1-208	ENST00000469356	SEMA3E	O15041	775 aa		28.13	■■■□□ 2.09
SREBF1-208	ENST00000469356	UQCRFS1P1	P0C7P4	283 aa		28.13	■■■□□ 2.09
SREBF1-208	ENST00000469356	CCDC102B	Q68D86	513 aa		28.13	■■■□□ 2.09
SREBF1-208	ENST00000469356	CENPQ	Q7L2Z9	268 aa	Predicted RBP	28.13	■■■□□ 2.09
SREBF1-208	ENST00000469356	GPATCH3	Q96I76	525 aa		28.13	■■■□□ 2.09
SREBF1-208	ENST00000469356	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	28.13	■■■□□ 2.09
SREBF1-208	ENST00000469356	SMARCA5	O60264	1052 aa	Predicted RBP	28.12	■■■□□ 2.09
SREBF1-208	ENST00000469356	ADORA1	P30542	326 aa		28.12	■■■□□ 2.09
SREBF1-208	ENST00000469356	TTC39A	Q5SRH9	613 aa		28.12	■■■□□ 2.09
SREBF1-208	ENST00000469356	CIAPIN1	Q6FI81	312 aa		28.12	■■■□□ 2.09
SREBF1-208	ENST00000469356	TDRD7	Q8NHU6	1098 aa	Known RBP	28.12	■■■□□ 2.09
SREBF1-208	ENST00000469356	TIAM2	Q8IVF5	1701 aa		28.11	■■■□□ 2.09
SREBF1-208	ENST00000469356	ZBTB22	O15209	634 aa		28.11	■■■□□ 2.09
SREBF1-208	ENST00000469356	B4GALNT3	Q6L9W6	998 aa		28.11	■■■□□ 2.09
SREBF1-208	ENST00000469356	DBNDD2	Q9BQY9	259 aa		28.11	■■■□□ 2.09
SREBF1-208	ENST00000469356	DENND2A	Q9ULE3	1009 aa		28.11	■■■□□ 2.09
SREBF1-208	ENST00000469356	USP17L3	A6NCW0	530 aa		28.1	■■■□□ 2.09
SREBF1-208	ENST00000469356	USP17L4	A6NCW7	530 aa		28.1	■■■□□ 2.09
SREBF1-208	ENST00000469356	USP17L1	Q7RTZ2	530 aa		28.1	■■■□□ 2.09
SREBF1-208	ENST00000469356	DBNL	Q9UJU6	430 aa	Known RBP	28.1	■■■□□ 2.09
SREBF1-208	ENST00000469356	PHKA1	P46020	1223 aa		28.09	■■■□□ 2.09
SREBF1-208	ENST00000469356	STRIP1	Q5VSL9	837 aa		28.09	■■■□□ 2.09
SREBF1-208	ENST00000469356	TTLL5	Q6EMB2	1281 aa		28.09	■■■□□ 2.09
SREBF1-208	ENST00000469356	FBXW7	Q969H0	707 aa		28.09	■■■□□ 2.09
SREBF1-208	ENST00000469356	NUCB1	Q02818	461 aa		28.08	■■■□□ 2.09
SREBF1-208	ENST00000469356	CHD1L	Q86WJ1	897 aa		28.08	■■■□□ 2.09
SREBF1-208	ENST00000469356	ZNF512B	Q96KM6	892 aa	Predicted RBP	28.08	■■■□□ 2.09
SREBF1-208	ENST00000469356	MYH13	Q9UKX3	1938 aa		28.08	■■■□□ 2.08
SREBF1-208	ENST00000469356	YDJC	A8MPS7	323 aa		28.07	■■■□□ 2.08
SREBF1-208	ENST00000469356	RAD17	O75943	681 aa		28.07	■■■□□ 2.08
SREBF1-208	ENST00000469356	CXCL9	Q07325	125 aa		28.07	■■■□□ 2.08
SREBF1-208	ENST00000469356	TBC1D22A	Q8WUA7	517 aa		28.07	■■■□□ 2.08
SREBF1-208	ENST00000469356	COL4A5	P29400	1685 aa		28.06	■■■□□ 2.08
SREBF1-208	ENST00000469356	ARID4A	P29374	1257 aa	Predicted RBP	28.06	■■■□□ 2.08
SREBF1-208	ENST00000469356	GTF2I	P78347	998 aa		28.06	■■■□□ 2.08
SREBF1-208	ENST00000469356	GPC2	Q8N158	579 aa		28.06	■■■□□ 2.08
SREBF1-208	ENST00000469356	FAM205A	Q6ZU69	1335 aa		28.06	■■■□□ 2.08
SREBF1-208	ENST00000469356	MYO3B	Q8WXR4	1341 aa		28.06	■■■□□ 2.08
SREBF1-208	ENST00000469356	WDR66	Q8TBY9	1149 aa		28.05	■■■□□ 2.08
SREBF1-208	ENST00000469356	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	28.05	■■■□□ 2.08

Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms