RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 LARP1BQ659C4 914 aaKnown RBP16.23■□□□□ 0.19
CLK3-203ENST00000454830 CCDC102BQ68D86 513 aa16.23■□□□□ 0.19
CLK3-203ENST00000454830 RBM27Q9P2N5 1060 aaKnown RBP16.23■□□□□ 0.19
CLK3-203ENST00000454830 FIBPO43427 364 aa16.23■□□□□ 0.19
CLK3-203ENST00000454830 LMBRD1Q9NUN5 540 aa16.23■□□□□ 0.19
CLK3-203ENST00000454830 SRP68Q9UHB9 627 aaKnown RBP16.23■□□□□ 0.19
CLK3-203ENST00000454830 DDX11Q96FC9 970 aa16.22■□□□□ 0.19
CLK3-203ENST00000454830 COL22A1Q8NFW1 1626 aaPredicted RBP16.22■□□□□ 0.19
CLK3-203ENST00000454830 A0A0G2JLW4 131 aa16.22■□□□□ 0.19
CLK3-203ENST00000454830 USPL1Q5W0Q7 1092 aa16.22■□□□□ 0.19
CLK3-203ENST00000454830 KLHL40Q2TBA0 621 aa16.22■□□□□ 0.19
CLK3-203ENST00000454830 ERFEQ4G0M1 354 aa16.22■□□□□ 0.19
CLK3-203ENST00000454830 SLIT2O94813 1529 aa16.21■□□□□ 0.19
CLK3-203ENST00000454830 VPS37DQ86XT2 251 aa16.21■□□□□ 0.19
CLK3-203ENST00000454830 LPIN2Q92539 896 aa16.21■□□□□ 0.19
CLK3-203ENST00000454830 IL27Q8NEV9 243 aa16.21■□□□□ 0.19
CLK3-203ENST00000454830 TJP1Q07157 1748 aa16.21■□□□□ 0.18
CLK3-203ENST00000454830 ZFYP08048 801 aaPredicted RBP16.21■□□□□ 0.18
CLK3-203ENST00000454830 ZSCAN22P10073 491 aaPredicted RBP16.21■□□□□ 0.18
CLK3-203ENST00000454830 NBPF5PQ86XG9 351 aaPredicted RBP16.21■□□□□ 0.18
CLK3-203ENST00000454830 IL17RAQ96F46 866 aa16.21■□□□□ 0.18
CLK3-203ENST00000454830 PUS7LQ9H0K6 701 aaKnown RBP16.21■□□□□ 0.18
CLK3-203ENST00000454830 SETDB2Q96T68 719 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 MROH5Q6ZUA9 1318 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 CCT2P78371 535 aaKnown RBP16.2■□□□□ 0.18
CLK3-203ENST00000454830 IMMTQ16891 758 aaKnown RBP16.2■□□□□ 0.18
CLK3-203ENST00000454830 ZSCAN25Q6NSZ9 544 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 STK11IPQ8N1F8 1099 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 FAM184AQ8NB25 1140 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 APPBP2Q92624 585 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 KCNB2Q92953 911 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 CDC5LQ99459 802 aaKnown RBP16.2■□□□□ 0.18
CLK3-203ENST00000454830 GPAA1O43292 621 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 RALYLQ86SE5 291 aaKnown RBP16.2■□□□□ 0.18
CLK3-203ENST00000454830 ABCF2Q9UG63 623 aa16.2■□□□□ 0.18
CLK3-203ENST00000454830 RTCBQ9Y3I0 505 aaKnown RBP16.2■□□□□ 0.18
CLK3-203ENST00000454830 UQCRFS1P1P0C7P4 283 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 DSCC1Q9BVC3 393 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 PANK2Q9BZ23 570 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 CTNNA3Q9UI47 895 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 CNPY2Q9Y2B0 182 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 NTSR2O95665 410 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 HSPA1LP34931 641 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 BCAMP50895 628 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 ANKRD18AQ8IVF6 992 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 ATP6V1DQ9Y5K8 247 aa16.19■□□□□ 0.18
CLK3-203ENST00000454830 APOBRQ0VD83 1088 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 TOB2Q14106 344 aaPredicted RBP16.18■□□□□ 0.18
CLK3-203ENST00000454830 TTF1Q15361 905 aaPredicted RBP16.18■□□□□ 0.18
CLK3-203ENST00000454830 AIDAQ96BJ3 306 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 PIH1D3Q9NQM4 214 aaKnown RBP16.18■□□□□ 0.18
CLK3-203ENST00000454830 TOMM22Q9NS69 142 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 LRP6O75581 1613 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 AFF2P51816 1311 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 H3BQV1 296 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 IFFO2Q5TF58 517 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 STOX1Q6ZVD7 989 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 LRP2BPQ9P2M1 347 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 RFX7Q2KHR2 1363 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 RPAP1Q9BWH6 1393 aaPredicted RBP16.18■□□□□ 0.18
CLK3-203ENST00000454830 E7EWF7 191 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 XRCC6P12956 609 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLK3-203ENST00000454830 TBC1D9BQ66K14 1250 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 CLEC17AQ6ZS10 378 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 RAB11FIP4Q86YS3 637 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.18■□□□□ 0.18
CLK3-203ENST00000454830 GRPEL1Q9HAV7 217 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 RIC1Q4ADV7 1423 aa16.18■□□□□ 0.18
CLK3-203ENST00000454830 CHRNDQ07001 517 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 DHX32Q7L7V1 743 aaKnown RBP16.17■□□□□ 0.18
CLK3-203ENST00000454830 BCL9LQ86UU0 1499 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 ZNF532Q9HCE3 1301 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 ZNF213O14771 459 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 F13A1P00488 732 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 RFC4P35249 363 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 USP48Q86UV5 1035 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 FNBP4Q8N3X1 1017 aaPredicted RBP16.17■□□□□ 0.18
CLK3-203ENST00000454830 MAGEB6Q8N7X4 407 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 SPATA5Q8NB90 893 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 GJD4Q96KN9 370 aaPredicted RBP16.17■□□□□ 0.18
CLK3-203ENST00000454830 WWC3Q9ULE0 1092 aa16.17■□□□□ 0.18
CLK3-203ENST00000454830 JAK2O60674 1132 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 FGAP02671 866 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 HMGB1P09429 215 aaKnown RBP16.16■□□□□ 0.18
CLK3-203ENST00000454830 MRE11P49959 708 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 TRDNQ13061 729 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 AK7Q96M32 723 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 MAP3K12Q12852 859 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 GPT2Q8TD30 523 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 NUP98P52948 1817 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 FAM173BQ6P4H8 233 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 GAS2L3Q86XJ1 694 aa16.16■□□□□ 0.18
CLK3-203ENST00000454830 ANP32BQ92688 251 aaKnown RBP16.16■□□□□ 0.18
CLK3-203ENST00000454830 PDCP20941 246 aa16.15■□□□□ 0.18
CLK3-203ENST00000454830 VGLL2Q8N8G2 317 aa16.15■□□□□ 0.18
CLK3-203ENST00000454830 NSFL1CQ9UNZ2 370 aaKnown RBP16.15■□□□□ 0.18
CLK3-203ENST00000454830 DNM1Q05193 864 aaKnown RBP16.15■□□□□ 0.18
CLK3-203ENST00000454830 RASGRF1Q13972 1273 aa16.15■□□□□ 0.18
CLK3-203ENST00000454830 C3orf67Q6ZVT6 689 aa16.15■□□□□ 0.18
CLK3-203ENST00000454830 SEPT12Q8IYM1 358 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 120.1 ms