RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 SOGA1O94964 1423 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 PPEF1O14829 653 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 APOBRQ0VD83 1088 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 IFRD2Q12894 506 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 KANK3Q6NY19 840 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 HSH2DQ96JZ2 352 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 CCDC113Q9H0I3 377 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 DISP3Q9P2K9 1392 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 MAGI1Q96QZ7 1491 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 ZNF608Q9ULD9 1512 aaPredicted RBP6.74□□□□□ -1.33
VPS13A-207ENST00000419472 TK2O00142 265 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 ASMTLO95671 621 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 PF4P02776 101 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 TSHZ1Q6ZSZ6 1077 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 C1orf127Q8N9H9 656 aa6.74□□□□□ -1.33
VPS13A-207ENST00000419472 CNGA1P29973 690 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 GSTT1P30711 240 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 UBR7Q8N806 425 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 FHDC1Q9C0D6 1143 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-207ENST00000419472 ELP3Q9H9T3 547 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 GREM1O60565 184 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 VARSP26640 1264 aaKnown RBP6.73□□□□□ -1.33
VPS13A-207ENST00000419472 FCGRTP55899 365 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 PHC3Q8NDX5 983 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 FBXO27Q8NI29 283 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 C8orf48Q96LL4 319 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 CEP89Q96ST8 783 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 SUPT16HQ9Y5B9 1047 aaKnown RBP6.73□□□□□ -1.33
VPS13A-207ENST00000419472 PTCH2Q9Y6C5 1203 aa6.73□□□□□ -1.33
VPS13A-207ENST00000419472 SNPHO15079 494 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 EIF3JO75822 258 aaKnown RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 NR3C2P08235 984 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 CELA3AP09093 270 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 IDH3AP50213 366 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 RALBP1Q15311 655 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 FOXD4L6Q3SYB3 417 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 C2orf27AQ580R0 203 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 FOXD4L3Q6VB84 417 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 CMTR1Q8N1G2 835 aaKnown RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 KCNMB2Q9Y691 235 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 CHD1O14646 1710 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 GRIN2BQ13224 1484 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 TLR3O15455 904 aaKnown RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 GNALP38405 381 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 EXOSC10Q01780 885 aaKnown RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 CENPCQ03188 943 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 TRIM32Q13049 653 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 WRNQ14191 1432 aaPredicted RBP eCLIP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 MTERF2Q49AM1 385 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 SEZ6Q53EL9 994 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 FBXW10Q5XX13 1052 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 LARP1BQ659C4 914 aaKnown RBP6.72□□□□□ -1.33
VPS13A-207ENST00000419472 CCDC116Q8IYX3 515 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 ZNF687Q8N1G0 1237 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 MARVELD3Q96A59 401 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 KCNQ5Q9NR82 932 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 CHST12Q9NRB3 414 aa6.72□□□□□ -1.33
VPS13A-207ENST00000419472 PWP1Q13610 501 aa6.71□□□□□ -1.33
VPS13A-207ENST00000419472 RASGRF1Q13972 1273 aa6.71□□□□□ -1.33
VPS13A-207ENST00000419472 SUV39H2Q9H5I1 410 aa6.71□□□□□ -1.33
VPS13A-207ENST00000419472 B2RBV5 119 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 UBAP1LF5GYI3 381 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 DHX9Q08211 1270 aaKnown RBP6.71□□□□□ -1.34
VPS13A-207ENST00000419472 GRIN2CQ14957 1233 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 PLA2G2CQ5R387 149 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 XKR5Q6UX68 686 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 TPTE2Q6XPS3 522 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 C7orf43Q8WVR3 580 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 TCEAL9Q9UHQ7 104 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 AKAP2Q9Y2D5 859 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 KDM2BQ8NHM5 1336 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 SYNJ1O43426 1573 aa6.71□□□□□ -1.34
VPS13A-207ENST00000419472 ALDH1L1O75891 902 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 DDX42Q86XP3 938 aaKnown RBP eCLIP6.7□□□□□ -1.34
VPS13A-207ENST00000419472 GALNT12Q8IXK2 581 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 NBPF15Q8N660 670 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 CCDC136Q96JN2 1154 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 MPHOSPH6Q99547 160 aaKnown RBP6.7□□□□□ -1.34
VPS13A-207ENST00000419472 ACTR10Q9NZ32 417 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 RTCBQ9Y3I0 505 aaKnown RBP6.7□□□□□ -1.34
VPS13A-207ENST00000419472 RAD54L2Q9Y4B4 1467 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 POTECB2RU33 542 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 TGFBR3LH3BV60 316 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 RPLP1P05386 114 aaKnown RBP6.7□□□□□ -1.34
VPS13A-207ENST00000419472 GRNP28799 593 aaKnown RBP6.7□□□□□ -1.34
VPS13A-207ENST00000419472 CAMK2GQ13555 558 aaPredicted RBP6.7□□□□□ -1.34
VPS13A-207ENST00000419472 SNAP47Q5SQN1 464 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 NKD1Q969G9 470 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 CDK15Q96Q40 435 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 ERICH3Q5RHP9 1530 aa6.7□□□□□ -1.34
VPS13A-207ENST00000419472 IRS4O14654 1257 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 GJB6O95452 261 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 UBE4AQ14139 1066 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 TTF1Q15361 905 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 PEAR1Q5VY43 1037 aaPredicted RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 PDE12Q6L8Q7 609 aaKnown RBP6.69□□□□□ -1.34
VPS13A-207ENST00000419472 THNSL2Q86YJ6 484 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 EHBP1Q8NDI1 1231 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 RBSNQ9H1K0 784 aa6.69□□□□□ -1.34
VPS13A-207ENST00000419472 LIG3P49916 1009 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms