RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ARID4AP29374 1257 aaPredicted RBP32.48■■■□□ 2.79
MSX1-201ENST00000382723 KBTBD3Q8NAB2 608 aa32.48■■■□□ 2.79
MSX1-201ENST00000382723 A0A1B0GUL6 1792 aa32.48■■■□□ 2.79
MSX1-201ENST00000382723 HIP1O00291 1037 aa32.47■■■□□ 2.79
MSX1-201ENST00000382723 GYG1P46976 350 aa32.47■■■□□ 2.79
MSX1-201ENST00000382723 NMIQ13287 307 aaPredicted RBP32.46■■■□□ 2.79
MSX1-201ENST00000382723 C2CD5Q86YS7 1000 aa32.46■■■□□ 2.79
MSX1-201ENST00000382723 ZNF804BA4D1E1 1349 aa32.46■■■□□ 2.79
MSX1-201ENST00000382723 RUFY2Q8WXA3 655 aa32.45■■■□□ 2.79
MSX1-201ENST00000382723 FAM227BQ96M60 508 aa32.45■■■□□ 2.79
MSX1-201ENST00000382723 PPEF1O14829 653 aaPredicted RBP32.45■■■□□ 2.78
MSX1-201ENST00000382723 SGSM2O43147 1006 aa32.45■■■□□ 2.78
MSX1-201ENST00000382723 ZBTB7AO95365 584 aa32.45■■■□□ 2.78
MSX1-201ENST00000382723 KLRK1P26718 216 aa32.45■■■□□ 2.78
MSX1-201ENST00000382723 MASTLQ96GX5 879 aa32.45■■■□□ 2.78
MSX1-201ENST00000382723 USP26Q9BXU7 913 aa32.45■■■□□ 2.78
MSX1-201ENST00000382723 ANO2Q9NQ90 1003 aa32.45■■■□□ 2.78
MSX1-201ENST00000382723 GPSM2P81274 684 aa32.44■■■□□ 2.78
MSX1-201ENST00000382723 R3HDM1Q15032 1099 aaKnown RBP32.44■■■□□ 2.78
MSX1-201ENST00000382723 CAVIN4Q5BKX8 364 aa32.44■■■□□ 2.78
MSX1-201ENST00000382723 ZNF622Q969S3 477 aaKnown RBP eCLIP32.44■■■□□ 2.78
MSX1-201ENST00000382723 XDHP47989 1333 aa32.44■■■□□ 2.78
MSX1-201ENST00000382723 HMG20BQ9P0W2 317 aa32.43■■■□□ 2.78
MSX1-201ENST00000382723 H0YIN7 160 aa32.43■■■□□ 2.78
MSX1-201ENST00000382723 CHGBP05060 677 aa32.43■■■□□ 2.78
MSX1-201ENST00000382723 ALDH1B1P30837 517 aa32.43■■■□□ 2.78
MSX1-201ENST00000382723 RASGRF1Q13972 1273 aa32.43■■■□□ 2.78
MSX1-201ENST00000382723 VPS37DQ86XT2 251 aa32.43■■■□□ 2.78
MSX1-201ENST00000382723 NSFL1CQ9UNZ2 370 aaKnown RBP32.43■■■□□ 2.78
MSX1-201ENST00000382723 SPATA5Q8NB90 893 aa32.42■■■□□ 2.78
MSX1-201ENST00000382723 IQSEC3Q9UPP2 1182 aaPredicted RBP32.42■■■□□ 2.78
MSX1-201ENST00000382723 A0A0D9SFI3 127 aa32.41■■■□□ 2.78
MSX1-201ENST00000382723 RBM25P49756 843 aaKnown RBP32.41■■■□□ 2.78
MSX1-201ENST00000382723 FAM84BQ96KN1 310 aaPredicted RBP32.41■■■□□ 2.78
MSX1-201ENST00000382723 LEMD3Q9Y2U8 911 aa32.41■■■□□ 2.78
MSX1-201ENST00000382723 COL11A2P13942 1736 aaPredicted RBP32.41■■■□□ 2.78
MSX1-201ENST00000382723 CYP2E1P05181 493 aaPredicted RBP32.41■■■□□ 2.78
MSX1-201ENST00000382723 CHRNA5P30532 468 aa32.41■■■□□ 2.78
MSX1-201ENST00000382723 RFX7Q2KHR2 1363 aa32.4■■■□□ 2.78
MSX1-201ENST00000382723 TMC4Q7Z404 712 aa32.4■■■□□ 2.78
MSX1-201ENST00000382723 GNL3LQ9NVN8 582 aaKnown RBP32.4■■■□□ 2.78
MSX1-201ENST00000382723 SP8Q8IXZ3 490 aa32.39■■■□□ 2.78
MSX1-201ENST00000382723 ATF5Q9Y2D1 282 aaPredicted RBP32.39■■■□□ 2.78
MSX1-201ENST00000382723 SLFNL1Q499Z3 407 aa32.38■■■□□ 2.77
MSX1-201ENST00000382723 ATP6V0A2Q9Y487 856 aa32.38■■■□□ 2.77
MSX1-201ENST00000382723 KIAA1211Q6ZU35 1233 aa32.38■■■□□ 2.77
MSX1-201ENST00000382723 TXNRD3Q86VQ6 643 aa32.38■■■□□ 2.77
MSX1-201ENST00000382723 GPR101Q96P66 508 aaPredicted RBP32.38■■■□□ 2.77
MSX1-201ENST00000382723 PIH1D3Q9NQM4 214 aaKnown RBP32.38■■■□□ 2.77
MSX1-201ENST00000382723 UFL1O94874 794 aa32.37■■■□□ 2.77
MSX1-201ENST00000382723 TTF1Q15361 905 aaPredicted RBP32.37■■■□□ 2.77
MSX1-201ENST00000382723 STYK1Q6J9G0 422 aa32.37■■■□□ 2.77
MSX1-201ENST00000382723 FBXO33Q7Z6M2 555 aa32.37■■■□□ 2.77
MSX1-201ENST00000382723 GGA1Q9UJY5 639 aa32.37■■■□□ 2.77
MSX1-201ENST00000382723 HIBADHP31937 336 aaKnown RBP32.36■■■□□ 2.77
MSX1-201ENST00000382723 RNF113AO15541 343 aaKnown RBP32.36■■■□□ 2.77
MSX1-201ENST00000382723 AKAP11Q9UKA4 1901 aa32.35■■■□□ 2.77
MSX1-201ENST00000382723 ATP2B4P23634 1241 aa32.35■■■□□ 2.77
MSX1-201ENST00000382723 OLFM4Q6UX06 510 aa32.35■■■□□ 2.77
MSX1-201ENST00000382723 MTFR1LQ9H019 292 aa32.35■■■□□ 2.77
MSX1-201ENST00000382723 RAD50Q92878 1312 aa32.35■■■□□ 2.77
MSX1-201ENST00000382723 SEC62Q99442 399 aaKnown RBP32.34■■■□□ 2.77
MSX1-201ENST00000382723 C10orf71Q711Q0 1435 aa32.34■■■□□ 2.77
MSX1-201ENST00000382723 IRS2Q9Y4H2 1338 aa32.34■■■□□ 2.77
MSX1-201ENST00000382723 PSDA5PKW4 1024 aaPredicted RBP32.34■■■□□ 2.77
MSX1-201ENST00000382723 FRAT2O75474 233 aaPredicted RBP32.34■■■□□ 2.77
MSX1-201ENST00000382723 IDH1O75874 414 aaKnown RBP32.34■■■□□ 2.77
MSX1-201ENST00000382723 LRRFIP1Q32MZ4 808 aaKnown RBP32.34■■■□□ 2.77
MSX1-201ENST00000382723 LSG1Q9H089 658 aaKnown RBP32.34■■■□□ 2.77
MSX1-201ENST00000382723 PODXL2Q9NZ53 605 aa32.34■■■□□ 2.77
MSX1-201ENST00000382723 TICAM2Q86XR7 235 aa32.33■■■□□ 2.77
MSX1-201ENST00000382723 ZNF589Q86UQ0 364 aaPredicted RBP32.32■■■□□ 2.76
MSX1-201ENST00000382723 DDX24Q9GZR7 859 aaKnown RBP eCLIP32.32■■■□□ 2.76
MSX1-201ENST00000382723 PRPF40BQ6NWY9 871 aaKnown RBP32.32■■■□□ 2.76
MSX1-201ENST00000382723 TBC1D16Q8TBP0 767 aa32.32■■■□□ 2.76
MSX1-201ENST00000382723 TMX4Q9H1E5 349 aaPredicted RBP32.32■■■□□ 2.76
MSX1-201ENST00000382723 POLLQ9UGP5 575 aa32.32■■■□□ 2.76
MSX1-201ENST00000382723 C6orf229H3BNL8 230 aa32.31■■■□□ 2.76
MSX1-201ENST00000382723 POLD1P28340 1107 aa32.31■■■□□ 2.76
MSX1-201ENST00000382723 MCMDC2Q4G0Z9 681 aa32.31■■■□□ 2.76
MSX1-201ENST00000382723 ZMYM1Q5SVZ6 1142 aa32.31■■■□□ 2.76
MSX1-201ENST00000382723 CCDC129Q6ZRS4 1044 aa32.31■■■□□ 2.76
MSX1-201ENST00000382723 MED23Q9ULK4 1368 aa32.31■■■□□ 2.76
MSX1-201ENST00000382723 PTH1RQ03431 593 aa32.3■■■□□ 2.76
MSX1-201ENST00000382723 DENND2AQ9ULE3 1009 aa32.3■■■□□ 2.76
MSX1-201ENST00000382723 ZFYP08048 801 aaPredicted RBP32.3■■■□□ 2.76
MSX1-201ENST00000382723 CNKSR1Q969H4 720 aa32.3■■■□□ 2.76
MSX1-201ENST00000382723 HELLSQ9NRZ9 838 aa32.3■■■□□ 2.76
MSX1-201ENST00000382723 ZNF219Q9P2Y4 722 aaPredicted RBP32.3■■■□□ 2.76
MSX1-201ENST00000382723 COL1A1P02452 1464 aaPredicted RBP32.29■■■□□ 2.76
MSX1-201ENST00000382723 WASHC4Q2M389 1173 aa32.29■■■□□ 2.76
MSX1-201ENST00000382723 SLC9C2Q5TAH2 1124 aa32.29■■■□□ 2.76
MSX1-201ENST00000382723 KIF2CQ99661 725 aa32.29■■■□□ 2.76
MSX1-201ENST00000382723 LRRC37AA6NMS7 1700 aa32.29■■■□□ 2.76
MSX1-201ENST00000382723 MCCP23508 829 aa32.28■■■□□ 2.76
MSX1-201ENST00000382723 MPNDQ8N594 471 aa32.28■■■□□ 2.76
MSX1-201ENST00000382723 DDRGK1Q96HY6 314 aa32.28■■■□□ 2.76
MSX1-201ENST00000382723 IPO9Q96P70 1041 aaKnown RBP32.28■■■□□ 2.76
MSX1-201ENST00000382723 ZSCAN25Q6NSZ9 544 aa32.28■■■□□ 2.76
MSX1-201ENST00000382723 C15orf52Q6ZUT6 534 aaKnown RBP32.28■■■□□ 2.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms