RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 USP44Q9H0E7 712 aa21.14■□□□□ 0.97
HMGN4-201ENST00000377575 PGAP2Q9UHJ9 254 aa21.14■□□□□ 0.97
HMGN4-201ENST00000377575 TAF5LO75529 589 aa21.13■□□□□ 0.97
HMGN4-201ENST00000377575 HIRAP54198 1017 aaPredicted RBP21.13■□□□□ 0.97
HMGN4-201ENST00000377575 SAMD7Q7Z3H4 446 aa21.13■□□□□ 0.97
HMGN4-201ENST00000377575 CNTNAP1P78357 1384 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 MYO3BQ8WXR4 1341 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 KLRK1P26718 216 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 KIF4BQ2VIQ3 1234 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 TBC1D10BQ4KMP7 808 aaPredicted RBP21.12■□□□□ 0.97
HMGN4-201ENST00000377575 C15orf52Q6ZUT6 534 aaKnown RBP21.12■□□□□ 0.97
HMGN4-201ENST00000377575 TXNRD3Q86VQ6 643 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 ANKRD44Q8N8A2 993 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 HELBQ8NG08 1087 aaPredicted RBP21.12■□□□□ 0.97
HMGN4-201ENST00000377575 ARHGAP45Q92619 1136 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 FBXW7Q969H0 707 aa21.12■□□□□ 0.97
HMGN4-201ENST00000377575 POLR2AP24928 1970 aaKnown RBP21.12■□□□□ 0.97
HMGN4-201ENST00000377575 STRIP1Q5VSL9 837 aa21.11■□□□□ 0.97
HMGN4-201ENST00000377575 MKRN1Q9UHC7 482 aaKnown RBP21.11■□□□□ 0.97
HMGN4-201ENST00000377575 PCNTO95613 3336 aa21.11■□□□□ 0.97
HMGN4-201ENST00000377575 ZBED9Q6R2W3 1325 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 MROH5Q6ZUA9 1318 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 PLIN1O60240 522 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 USP17L8P0C7I0 530 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 UBTFL1P0CB47 393 aaPredicted RBP21.1■□□□□ 0.97
HMGN4-201ENST00000377575 ZNF280AP59817 542 aaPredicted RBP21.1■□□□□ 0.97
HMGN4-201ENST00000377575 CDC37L1Q7L3B6 337 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 ZNF804AQ7Z570 1209 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 GMLQ99445 158 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 HDAC5Q9UQL6 1122 aa21.1■□□□□ 0.97
HMGN4-201ENST00000377575 IRS2Q9Y4H2 1338 aa21.09■□□□□ 0.97
HMGN4-201ENST00000377575 TRAF5O00463 557 aa21.09■□□□□ 0.97
HMGN4-201ENST00000377575 IPO8O15397 1037 aaKnown RBP21.09■□□□□ 0.97
HMGN4-201ENST00000377575 EGFRP00533 1210 aa21.09■□□□□ 0.97
HMGN4-201ENST00000377575 DACT2Q5SW24 774 aa21.09■□□□□ 0.97
HMGN4-201ENST00000377575 RBM26Q5T8P6 1007 aaKnown RBP21.09■□□□□ 0.97
HMGN4-201ENST00000377575 GLIS2Q9BZE0 524 aaPredicted RBP21.09■□□□□ 0.97
HMGN4-201ENST00000377575 ABT1Q9ULW3 272 aaKnown RBP21.09■□□□□ 0.97
HMGN4-201ENST00000377575 SNAP23O00161 211 aa21.08■□□□□ 0.97
HMGN4-201ENST00000377575 TTLL5Q6EMB2 1281 aa21.08■□□□□ 0.97
HMGN4-201ENST00000377575 ARAP2Q8WZ64 1704 aa21.08■□□□□ 0.97
HMGN4-201ENST00000377575 DCPSQ96C86 337 aaKnown RBP21.08■□□□□ 0.97
HMGN4-201ENST00000377575 CD209Q9NNX6 404 aa21.08■□□□□ 0.97
HMGN4-201ENST00000377575 MMP14P50281 582 aa21.07■□□□□ 0.96
HMGN4-201ENST00000377575 UBE4AQ14139 1066 aa21.07■□□□□ 0.96
HMGN4-201ENST00000377575 OGFOD1Q8N543 542 aa21.07■□□□□ 0.96
HMGN4-201ENST00000377575 PUS3Q9BZE2 481 aaKnown RBP21.07■□□□□ 0.96
HMGN4-201ENST00000377575 MYOZ2Q9NPC6 264 aa21.07■□□□□ 0.96
HMGN4-201ENST00000377575 RIPOR2Q9Y4F9 1068 aa21.07■□□□□ 0.96
HMGN4-201ENST00000377575 RASSF10A6NK89 507 aa21.06■□□□□ 0.96
HMGN4-201ENST00000377575 FMR1Q06787 632 aaKnown RBP eCLIP21.06■□□□□ 0.96
HMGN4-201ENST00000377575 KRT26Q7Z3Y9 468 aa21.06■□□□□ 0.96
HMGN4-201ENST00000377575 CELF2O95319 508 aaKnown RBP21.05■□□□□ 0.96
HMGN4-201ENST00000377575 IL1R1P14778 569 aa21.05■□□□□ 0.96
HMGN4-201ENST00000377575 GTF2IP78347 998 aa21.05■□□□□ 0.96
HMGN4-201ENST00000377575 METTL24Q5JXM2 366 aa21.05■□□□□ 0.96
HMGN4-201ENST00000377575 INTS3Q68E01 1043 aaKnown RBP21.05■□□□□ 0.96
HMGN4-201ENST00000377575 MXD3Q9BW11 206 aa21.05■□□□□ 0.96
HMGN4-201ENST00000377575 GGA3Q9NZ52 723 aa21.05■□□□□ 0.96
HMGN4-201ENST00000377575 ECM29Q5VYK3 1845 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 BCAR3O75815 825 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 TRIM27P14373 513 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 DEFB115Q30KQ5 88 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 LRRC24Q50LG9 513 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 CST9Q5W186 159 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 ATF7IPQ6VMQ6 1270 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 USP48Q86UV5 1035 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 SULF1Q8IWU6 871 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 FRAT1Q92837 279 aaPredicted RBP21.04■□□□□ 0.96
HMGN4-201ENST00000377575 ZNF408Q9H9D4 720 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 HDAC9Q9UKV0 1011 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 MYH13Q9UKX3 1938 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 THSD7BQ9C0I4 1608 aa21.04■□□□□ 0.96
HMGN4-201ENST00000377575 SCARF1Q14162 830 aa21.03■□□□□ 0.96
HMGN4-201ENST00000377575 LRRFIP2Q9Y608 721 aaKnown RBP21.03■□□□□ 0.96
HMGN4-201ENST00000377575 TLL2Q9Y6L7 1015 aa21.03■□□□□ 0.96
HMGN4-201ENST00000377575 PITPNM2Q9BZ72 1349 aa21.03■□□□□ 0.96
HMGN4-201ENST00000377575 GNAI3P08754 354 aa21.02■□□□□ 0.96
HMGN4-201ENST00000377575 VEGFBP49765 207 aa21.02■□□□□ 0.96
HMGN4-201ENST00000377575 KLHDC4Q8TBB5 520 aa21.02■□□□□ 0.96
HMGN4-201ENST00000377575 MEIS3Q99687 375 aa21.02■□□□□ 0.96
HMGN4-201ENST00000377575 ADM5C9JUS6 153 aa21.01■□□□□ 0.95
HMGN4-201ENST00000377575 RFX5P48382 616 aaPredicted RBP21.01■□□□□ 0.95
HMGN4-201ENST00000377575 ANGEL2Q5VTE6 544 aaKnown RBP21.01■□□□□ 0.95
HMGN4-201ENST00000377575 PAXIP1Q6ZW49 1069 aaPredicted RBP21.01■□□□□ 0.95
HMGN4-201ENST00000377575 KIAA0825Q8IV33 1275 aa21.01■□□□□ 0.95
HMGN4-201ENST00000377575 VGLL2Q8N8G2 317 aa21.01■□□□□ 0.95
HMGN4-201ENST00000377575 EYA2O00167 538 aa21■□□□□ 0.95
HMGN4-201ENST00000377575 PDE8BO95263 885 aa21■□□□□ 0.95
HMGN4-201ENST00000377575 HIBADHP31937 336 aaKnown RBP21■□□□□ 0.95
HMGN4-201ENST00000377575 ECE1P42892 770 aa21■□□□□ 0.95
HMGN4-201ENST00000377575 FKBP1AP62942 108 aaKnown RBP21■□□□□ 0.95
HMGN4-201ENST00000377575 ZKSCAN2Q63HK3 967 aa21■□□□□ 0.95
HMGN4-201ENST00000377575 VPS37DQ86XT2 251 aa21■□□□□ 0.95
HMGN4-201ENST00000377575 FBXO3Q9UK99 471 aa21■□□□□ 0.95
HMGN4-201ENST00000377575 ASTN2O75129 1339 aaPredicted RBP21■□□□□ 0.95
HMGN4-201ENST00000377575 HSPA1AP0DMV8 641 aaKnown RBP20.99■□□□□ 0.95
HMGN4-201ENST00000377575 HSPA1BP0DMV9 641 aaKnown RBP20.99■□□□□ 0.95
HMGN4-201ENST00000377575 GYG1P46976 350 aa20.99■□□□□ 0.95
HMGN4-201ENST00000377575 PTPN12Q05209 780 aaKnown RBP20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms