RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 Q6ZUG5 572 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 VPS36Q86VN1 386 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 TICAM2Q86XR7 235 aa11.21□□□□□ -0.61
COL4A6-202ENST00000372216 DDX23Q9BUQ8 820 aaKnown RBP11.21□□□□□ -0.61
COL4A6-202ENST00000372216 UBA7P41226 1012 aa11.21□□□□□ -0.62
COL4A6-202ENST00000372216 SMARCC2Q8TAQ2 1214 aa11.21□□□□□ -0.62
COL4A6-202ENST00000372216 ARHGEF10O15013 1369 aa11.21□□□□□ -0.62
COL4A6-202ENST00000372216 BIN1O00499 593 aa11.21□□□□□ -0.62
COL4A6-202ENST00000372216 ARHGEF12Q9NZN5 1544 aa11.21□□□□□ -0.62
COL4A6-202ENST00000372216 TBCAO75347 108 aaKnown RBP11.2□□□□□ -0.62
COL4A6-202ENST00000372216 UFL1O94874 794 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 NAPAP54920 295 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 TESK2Q96S53 571 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 ALG1Q9BT22 464 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 CALM1P0DP23 149 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 CALM2P0DP24 149 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 CALM3P0DP25 149 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 TOP1P11387 765 aaKnown RBP11.2□□□□□ -0.62
COL4A6-202ENST00000372216 TBC1D2Q9BYX2 928 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 SLAIN2Q9P270 581 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 ZNF790Q6PG37 636 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 ERMNQ8TAM6 284 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 PYM1Q9BRP8 204 aaKnown RBP11.2□□□□□ -0.62
COL4A6-202ENST00000372216 ESYT1Q9BSJ8 1104 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 VAMP4O75379 141 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 TRAF1Q13077 416 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 LUZP1Q86V48 1076 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 ZFP91Q96JP5 570 aaPredicted RBP11.2□□□□□ -0.62
COL4A6-202ENST00000372216 LRRC27Q9C0I9 530 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 GDPD2Q9HCC8 539 aa11.2□□□□□ -0.62
COL4A6-202ENST00000372216 PHACTR2O75167 634 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 CASQ1P31415 396 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 PLBD2Q8NHP8 589 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 PZPP20742 1482 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 PRIM1P49642 420 aaKnown RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 GNAQP50148 359 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 CETN1Q12798 172 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 SAP30BPQ9UHR5 308 aaKnown RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 RTL9Q8NET4 1388 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 SBNO2Q9Y2G9 1366 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 NOP2P46087 812 aaKnown RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 CEP85Q6P2H3 762 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 FAM89AQ96GI7 184 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 TCEANC2Q96MN5 208 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 EXOC1Q9NV70 894 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 ERLIN1O75477 346 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 TNPO1Q92973 898 aaKnown RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 BRPF3Q9ULD4 1205 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 ITGA6P23229 1130 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 TNNI2P48788 182 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 RRP36Q96EU6 259 aaKnown RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 SLC52A2Q9HAB3 445 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 TTC41PQ6P2S7 1318 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 SH3BP5O60239 455 aa11.19□□□□□ -0.62
COL4A6-202ENST00000372216 HCLS1P14317 486 aaPredicted RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 DDX19AQ9NUU7 478 aaKnown RBP11.19□□□□□ -0.62
COL4A6-202ENST00000372216 PIK3C2GO75747 1445 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 NBPF7P0C2Y1 421 aaPredicted RBP11.18□□□□□ -0.62
COL4A6-202ENST00000372216 SFPQP23246 707 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL4A6-202ENST00000372216 PARP10Q53GL7 1025 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 DENND2AQ9ULE3 1009 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 TNNQ9UQP3 1299 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 PCDHB15Q9Y5E8 787 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 APBA3O96018 575 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 IL13P35225 146 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 HSP90AA4PQ58FG1 418 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 FAM114A1Q8IWE2 563 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 PAIP2Q9BPZ3 127 aaKnown RBP11.18□□□□□ -0.62
COL4A6-202ENST00000372216 DDX21Q9NR30 783 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL4A6-202ENST00000372216 CCDC87Q9NVE4 849 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 STX1AQ16623 288 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 KANK3Q6NY19 840 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 NEO1Q92859 1461 aa11.18□□□□□ -0.62
COL4A6-202ENST00000372216 RBM25P49756 843 aaKnown RBP11.18□□□□□ -0.62
COL4A6-202ENST00000372216 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.18□□□□□ -0.62
COL4A6-202ENST00000372216 TMEM2Q9UHN6 1383 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 FAM170AA1A519 330 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 YEATS4O95619 227 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 CLIP2Q9UDT6 1046 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 MRVI1Q9Y6F6 885 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 LGR6Q9HBX8 967 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 ADGBQ8N7X0 1667 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 STAT6P42226 847 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 EAPPQ56P03 285 aaPredicted RBP11.17□□□□□ -0.62
COL4A6-202ENST00000372216 TSNARE1Q96NA8 513 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 METTL22Q9BUU2 404 aaPredicted RBP11.17□□□□□ -0.62
COL4A6-202ENST00000372216 ZSCAN16Q9H4T2 348 aaPredicted RBP11.17□□□□□ -0.62
COL4A6-202ENST00000372216 GGA1Q9UJY5 639 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 ZSCAN12O43309 604 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 CHST3Q7LGC8 479 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 TMX3Q96JJ7 454 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 PKNOX2Q96KN3 472 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 C6orf50Q9HD87 102 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 MYO5CQ9NQX4 1742 aa11.17□□□□□ -0.62
COL4A6-202ENST00000372216 SOS1Q07889 1333 aaPredicted RBP11.16□□□□□ -0.62
COL4A6-202ENST00000372216 UQCRHP07919 91 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 H0YIN7 160 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 PDE8AO60658 829 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 FERP16591 822 aa11.16□□□□□ -0.62
COL4A6-202ENST00000372216 CCDC102BQ68D86 513 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms