RNA–Protein interactions for RNA: ENST00000343200.9

VCAN-203, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 9,455 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-203ENST00000343200 RAB11FIP3O75154 756 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 DYNC1I2Q13409 638 aaKnown RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 TRIM6Q9C030 488 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 EPS15L1Q9UBC2 864 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 SEC63Q9UGP8 760 aaKnown RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 GNAI2P04899 355 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 CCDC159P0C7I6 412 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 GJC2Q5T442 439 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 GFM2Q969S9 779 aaKnown RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 DACT3Q96B18 629 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 JPH2Q9BR39 696 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 TXNDC16Q9P2K2 825 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 JRKLQ9Y4A0 524 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 SMARCA2P51531 1590 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 MAP2P11137 1827 aaKnown RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 HSPA1LP34931 641 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 ARL1P40616 181 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 HCLS1P14317 486 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 SNX16P57768 344 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 BIRC2Q13490 618 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 DENND2CQ68D51 928 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 GSTA5Q7RTV2 222 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 CNNM3Q8NE01 707 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 CHMP7Q8WUX9 453 aaPredicted RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 IRAK4Q9NWZ3 460 aa6.95□□□□□ -1.3
VCAN-203ENST00000343200 DHX57Q6P158 1386 aaKnown RBP6.95□□□□□ -1.3
VCAN-203ENST00000343200 E7EVH7 732 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 TXNDC9O14530 226 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 TNIP1Q15025 636 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 RRP36Q96EU6 259 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 USP37Q86T82 979 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 RMND1Q9NWS8 449 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 CTNNA3Q9UI47 895 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 RIPK4P57078 832 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 PHEXP78562 749 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 ANO6Q4KMQ2 910 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.94□□□□□ -1.3
VCAN-203ENST00000343200 NEK1Q96PY6 1258 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 EIF2AK4Q9P2K8 1649 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 TEFQ10587 303 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 TMEM57Q8N5G2 664 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 MRPL46Q9H2W6 279 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 RNF216Q9NWF9 866 aaPredicted RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 CCDC141Q6ZP82 1450 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 ACTN4O43707 911 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 OAS2P29728 719 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 NOP14P78316 857 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 FNBP4Q8N3X1 1017 aaPredicted RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 HAUS1Q96CS2 278 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 PAWRQ96IZ0 340 aaKnown RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 KCNK9Q9NPC2 374 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 PALM3A6NDB9 673 aaPredicted RBP6.94□□□□□ -1.3
VCAN-203ENST00000343200 CCDC26Q8TAB7 109 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 ORC6Q9Y5N6 252 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 KNTC1P50748 2209 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 RHOXF2BP0C7M4 288 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 AMOTQ4VCS5 1084 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 RHOXF2Q9BQY4 288 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 PDZRN3Q9UPQ7 1066 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 NDC80O14777 642 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 MTMR3Q13615 1198 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 ICE2Q659A1 982 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 IFT81Q8WYA0 676 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 DIABLOQ9NR28 239 aa6.94□□□□□ -1.3
VCAN-203ENST00000343200 E9PMD0 336 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 MX1P20591 662 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 U2AF2P26368 475 aaKnown RBP eCLIP6.93□□□□□ -1.3
VCAN-203ENST00000343200 FOXD1Q16676 465 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 SCHIP1Q9P0W5 487 aaPredicted RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 CNGA4Q8IV77 575 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 BAIAP2L1Q9UHR4 511 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 TTC21AQ8NDW8 1320 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 AMPD3Q01432 767 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 TMEM232C9JQI7 657 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 IGSF3O75054 1194 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 CCT4P50991 539 aaKnown RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 SDCCAG3Q96C92 435 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 STK38LQ9Y2H1 464 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 RRP15Q9Y3B9 282 aaKnown RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 STX6O43752 255 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 BAG4O95429 457 aaKnown RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 MTIF2P46199 727 aaKnown RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 NEK2P51955 445 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 OPTNQ96CV9 577 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 GNL3LQ9NVN8 582 aaKnown RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 APOEP02649 317 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 EVCP57679 992 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 PPP1R7Q15435 360 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 FERMT2Q96AC1 680 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 COG3Q96JB2 828 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 NEUROD6Q96NK8 337 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 BAG1Q99933 345 aaPredicted RBP6.93□□□□□ -1.3
VCAN-203ENST00000343200 ERICH3Q5RHP9 1530 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 A0A1B0GW55 424 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 DUX4L2P0CJ85 424 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 DUX4L3P0CJ86 424 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 DUX4L4P0CJ87 422 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 DUX4L5P0CJ88 424 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 DUX4L6P0CJ89 424 aa6.93□□□□□ -1.3
VCAN-203ENST00000343200 DUX4L7P0CJ90 424 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 160.2 ms