RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 HECW2Q9P2P5 1572 aa11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 F6X3S4 739 aa11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 MKRN1Q9UHC7 482 aaKnown RBP11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 TTF2Q9UNY4 1162 aaKnown RBP11.71□□□□□ -0.54
CCDC88A-202ENST00000336838 ANKRD13DQ6ZTN6 518 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 NAP1L4Q99733 375 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 CRNKL1Q9BZJ0 848 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 KIF5AQ12840 1032 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 RTN1Q16799 776 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 TMEM132AQ24JP5 1023 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 STAT6P42226 847 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 TRMT1Q9NXH9 659 aaKnown RBP11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 GTF2F1P35269 517 aaKnown RBP eCLIP11.7□□□□□ -0.547e-11■■■■□ 23.4
CCDC88A-202ENST00000336838 USP5P45974 858 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 NAA16Q6N069 864 aaPredicted RBP11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 BICDL1Q6ZP65 573 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 NDC80O14777 642 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 ZMYND15Q9H091 742 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC186Q7Z3E2 898 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 NBPF11Q86T75 865 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 SPATA24Q86W54 205 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 MEIS3Q99687 375 aa11.7□□□□□ -0.54
CCDC88A-202ENST00000336838 FSD2A1L4K1 749 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 SSBP05455 408 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 VAV2P52735 878 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 RILPL1Q5EBL4 403 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 MEX3CQ5U5Q3 659 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 UBE3BQ7Z3V4 1068 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 ZNF444Q8N0Y2 327 aaPredicted RBP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 TRIM47Q96LD4 638 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 TDRD12Q587J7 1177 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 PAG1Q9NWQ8 432 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 CHD1O14646 1710 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 TRIM75PA6NK02 468 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 WAPLQ7Z5K2 1190 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 ATP10AO60312 1499 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 DNM1Q05193 864 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 ACEP12821 1306 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 HLTFQ14527 1009 aaKnown RBP eCLIP11.69□□□□□ -0.541e-6■□□□□ 9
CCDC88A-202ENST00000336838 CREB3L3Q68CJ9 461 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 GSTTP1A0A1W2PQM5 241 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 MYL5Q02045 173 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 SPECC1Q5M775 1068 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 POTEDQ86YR6 584 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 SETBP1Q9Y6X0 1596 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC96Q2M329 555 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 SPATS2Q86XZ4 545 aaKnown RBP11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC77Q9BR77 488 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 GLT8D2Q9H1C3 349 aa11.69□□□□□ -0.54
CCDC88A-202ENST00000336838 KRI1Q8N9T8 703 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 ALG1Q9BT22 464 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 KAT14Q9H8E8 782 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 RGS12O14924 1447 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 KIAA0753Q2KHM9 967 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 MIS18AQ9NYP9 233 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 AKR1B10O60218 316 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 ATP5DP30049 168 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 TSKSQ9UJT2 592 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 AK2P54819 239 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC40Q4G0X9 1142 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 MICU3Q86XE3 530 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 PLCG2P16885 1265 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 CCT2P78371 535 aaKnown RBP11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC152Q4G0S7 254 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 Q6ZUG5 572 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 DNAI1Q9UI46 699 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 ZBTB7BO15156 539 aaPredicted RBP11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 VWA3BQ502W6 1294 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 PPP1R9BQ96SB3 815 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 PANK2Q9BZ23 570 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 CLSTN2Q9H4D0 955 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 HDAC9Q9UKV0 1011 aa11.68□□□□□ -0.54
CCDC88A-202ENST00000336838 MAGI3Q5TCQ9 1506 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 MPNDQ8N594 471 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 IQUBQ8NA54 791 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC8Q9H0W5 538 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 POLR3DP05423 398 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 AOPEPQ8N6M6 819 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 KLF18A0A0U1RQI7 1052 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 ANKRD62A6NC57 917 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 ABCF2Q9UG63 623 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 ABCC4O15439 1325 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 BRF1Q92994 677 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 RANBP6O60518 1105 aaKnown RBP11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 GDPD2Q9HCC8 539 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 ARHGAP6O43182 974 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 ZPR1O75312 459 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 HOXA7P31268 230 aaPredicted RBP11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 PPM1EQ8WY54 764 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 NUP58Q9BVL2 599 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 AMOTL2Q9Y2J4 779 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 ATP2A1O14983 1001 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 MNAT1P51948 309 aa11.67□□□□□ -0.54
CCDC88A-202ENST00000336838 MINDY4BA8MYZ0 360 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 TNNC1P63316 161 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC129Q6ZRS4 1044 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 CCDC51Q96ER9 411 aa11.66□□□□□ -0.54
CCDC88A-202ENST00000336838 POLKQ9UBT6 870 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms