RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 GRM2Q14416 872 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 PI16Q6UXB8 463 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 C1orf229Q6ZS94 237 aaPredicted RBP5.66□□□□□ -1.5
HMGB1-201ENST00000326004 CCNJLQ8IV13 435 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 MRRFQ96E11 262 aaKnown RBP5.66□□□□□ -1.5
HMGB1-201ENST00000326004 BCO2Q9BYV7 579 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 BHLHE41Q9C0J9 482 aaPredicted RBP5.66□□□□□ -1.5
HMGB1-201ENST00000326004 SMG9Q9H0W8 520 aaKnown RBP5.66□□□□□ -1.5
HMGB1-201ENST00000326004 RASSF4Q9H2L5 321 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 LIN7BQ9HAP6 207 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 FAM8A1Q9UBU6 413 aa5.66□□□□□ -1.5
HMGB1-201ENST00000326004 UNCXA6NJT0 531 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 E9PSI1 815 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 PDE2AO00408 941 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-201ENST00000326004 RGS9O75916 674 aaPredicted RBP5.65□□□□□ -1.5
HMGB1-201ENST00000326004 XRCC5P13010 732 aaKnown RBP5.65□□□□□ -1.5
HMGB1-201ENST00000326004 ACPPP15309 386 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 ATP11AP98196 1134 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 MRPL58Q14197 206 aaKnown RBP5.65□□□□□ -1.5
HMGB1-201ENST00000326004 CEP135Q66GS9 1140 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 LYPD4Q6UWN0 246 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 CHSY3Q70JA7 882 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 NPM2Q86SE8 214 aaKnown RBP5.65□□□□□ -1.5
HMGB1-201ENST00000326004 NXPE3Q969Y0 559 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 ZNF428Q96B54 188 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 BTBD6Q96KE9 485 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 TCF12Q99081 682 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 OSBPL7Q9BZF2 842 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 ZFYVE1Q9HBF4 777 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 ENAMQ9NRM1 1142 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 VTI1BQ9UEU0 232 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 STARD13Q9Y3M8 1113 aa5.65□□□□□ -1.5
HMGB1-201ENST00000326004 PTPRAP18433 802 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 GSTT1P30711 240 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 PTPN12Q05209 780 aaKnown RBP5.64□□□□□ -1.51
HMGB1-201ENST00000326004 NXPE4Q6UWF7 544 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 C20orf204Q6ZNR8 217 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 GLIS3Q8NEA6 775 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 FAM161BQ96MY7 647 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 JPH1Q9HDC5 661 aaPredicted RBP5.64□□□□□ -1.51
HMGB1-201ENST00000326004 PRDM6Q9NQX0 595 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 RNF19AQ9NV58 838 aa5.64□□□□□ -1.51
HMGB1-201ENST00000326004 TMEM238LA0A1B0GVL6 79 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 FAM177BA6PVY3 158 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 SHISA8B8ZZ34 492 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 LILRB5O75023 590 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 ALBP02768 609 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 AMPD1P23109 780 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 ZNF385CQ66K41 422 aaPredicted RBP5.63□□□□□ -1.51
HMGB1-201ENST00000326004 SVOPQ8N4V2 548 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 WHAMMQ8TF30 809 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 NUDT8Q8WV74 236 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 CRELD1Q96HD1 420 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 POP1Q99575 1024 aaKnown RBP5.63□□□□□ -1.51
HMGB1-201ENST00000326004 ABCB6Q9NP58 842 aa5.63□□□□□ -1.51
HMGB1-201ENST00000326004 KIAA1522Q9P206 1035 aaPredicted RBP5.63□□□□□ -1.51
HMGB1-201ENST00000326004 A0A096LPE4 126 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 A0A1W2PPZ6 126 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 M0R082 166 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 TRPA1O75762 1119 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 USP17L7P0C7H9 530 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 ITPKAP23677 461 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 FCGRTP55899 365 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 DTHD1Q6ZMT9 781 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 ZNF417Q8TAU3 575 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 ANKRD24Q8TF21 1146 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 BSNDQ8WZ55 320 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 HHIPQ96QV1 700 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 ZNF587Q96SQ5 575 aaPredicted RBP5.62□□□□□ -1.51
HMGB1-201ENST00000326004 ADAM19Q9H013 955 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 MUC3BQ9H195 1237 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 PPM1HQ9ULR3 514 aa5.62□□□□□ -1.51
HMGB1-201ENST00000326004 CDC27P30260 824 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 GRIA4P48058 902 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 AFF1P51825 1210 aaKnown RBP5.61□□□□□ -1.51
HMGB1-201ENST00000326004 GRIK5Q16478 980 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 RPS26P11Q5JNZ5 115 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-201ENST00000326004 GDF6Q6KF10 455 aaPredicted RBP5.61□□□□□ -1.51
HMGB1-201ENST00000326004 C3orf58Q8NDZ4 430 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 NEDD1Q8NHV4 660 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 ASAP3Q8TDY4 903 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 SOX13Q9UN79 622 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 TRIM33Q9UPN9 1127 aa5.61□□□□□ -1.51
HMGB1-201ENST00000326004 PIK3R2O00459 728 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 ARHGEF15O94989 841 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 RECKO95980 971 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 CTSHP09668 335 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 DGKGP49619 791 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 ST13P50502 369 aaKnown RBP5.6□□□□□ -1.51
HMGB1-201ENST00000326004 CABP4P57796 275 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 SPRED3Q2MJR0 410 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 TSNAXIP1Q2TAA8 658 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 LACRTQ9GZZ8 138 aa5.6□□□□□ -1.51
HMGB1-201ENST00000326004 METTL12A8MUP2 240 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 EIF4EBP3O60516 100 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-201ENST00000326004 INSM1Q01101 510 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-201ENST00000326004 TAF1CQ15572 869 aaPredicted RBP5.59□□□□□ -1.51
HMGB1-201ENST00000326004 MSL1Q68DK7 614 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 WFDC8Q8IUA0 241 aa5.59□□□□□ -1.51
HMGB1-201ENST00000326004 IL22RA1Q8N6P7 574 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms