RNA–Protein interactions for RNA: ENST00000307017.8

USP38-201, Transcript of ubiquitin specific peptidase 38, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP38, Length 7,009 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP38-201ENST00000307017 SH3BP5O60239 455 aa14.34□□□□□ -0.11
USP38-201ENST00000307017 CCDC171Q6TFL3 1326 aa14.34□□□□□ -0.11
USP38-201ENST00000307017 CCDC196A0A1B0GTZ2 297 aa14.34□□□□□ -0.11
USP38-201ENST00000307017 AK2P54819 239 aa14.34□□□□□ -0.11
USP38-201ENST00000307017 RAB3IL1Q8TBN0 382 aa14.33□□□□□ -0.11
USP38-201ENST00000307017 PRG4Q92954 1404 aaPredicted RBP14.33□□□□□ -0.11
USP38-201ENST00000307017 STK38LQ9Y2H1 464 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 ELF2Q15723 593 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 UTP14CQ5TAP6 766 aaKnown RBP14.33□□□□□ -0.12
USP38-201ENST00000307017 TAB3Q8N5C8 712 aaPredicted RBP14.33□□□□□ -0.12
USP38-201ENST00000307017 RAB34Q9BZG1 259 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 RBSNQ9H1K0 784 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 GAPVD1Q14C86 1478 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 CWC25Q9NXE8 425 aaPredicted RBP14.33□□□□□ -0.12
USP38-201ENST00000307017 CEP85LQ5SZL2 805 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 CCDC170Q8IYT3 715 aa14.33□□□□□ -0.12
USP38-201ENST00000307017 C9orf84Q5VXU9 1444 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 DDX39AO00148 427 aaKnown RBP14.32□□□□□ -0.12
USP38-201ENST00000307017 NDC80O14777 642 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 NAPAP54920 295 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 BEND3Q5T5X7 828 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 FMNL3Q8IVF7 1028 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 GEN1Q17RS7 908 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 PABPN1LA6NDY0 278 aaKnown RBP14.32□□□□□ -0.12
USP38-201ENST00000307017 ZBTB43O43298 467 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 ACTN2P35609 894 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 AMPD3Q01432 767 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 KLHL40Q2TBA0 621 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 CCDC122Q5T0U0 273 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 CCDC94Q9BW85 323 aaPredicted RBP14.32□□□□□ -0.12
USP38-201ENST00000307017 RIOK3O14730 519 aaKnown RBP14.32□□□□□ -0.12
USP38-201ENST00000307017 RTN1Q16799 776 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 OTUD7BQ6GQQ9 843 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 MAGEB6Q8N7X4 407 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 ECHDC1Q9NTX5 307 aa14.32□□□□□ -0.12
USP38-201ENST00000307017 POTEB2H3BUK9 544 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 F13A1P00488 732 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 CCDC24Q8N4L8 307 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 SLU7O95391 586 aaKnown RBP14.31□□□□□ -0.12
USP38-201ENST00000307017 PPP2R3AQ06190 1150 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 EPSTI1Q96J88 318 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 CHAMP1Q96JM3 812 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 CEBPAP49715 358 aaPredicted RBP14.31□□□□□ -0.12
USP38-201ENST00000307017 STAMQ92783 540 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 HMGB1P09429 215 aaKnown RBP14.31□□□□□ -0.12
USP38-201ENST00000307017 NUCB1Q02818 461 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 FOXD4Q12950 439 aaPredicted RBP14.31□□□□□ -0.12
USP38-201ENST00000307017 KIF22Q14807 665 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 MAP7D1Q3KQU3 841 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 VWA3AA6NCI4 1184 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 TXNDC9O14530 226 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 CEP83Q9Y592 693 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 PHAXQ9H814 394 aaKnown RBP14.31□□□□□ -0.12
USP38-201ENST00000307017 CABP5Q9NP86 173 aa14.31□□□□□ -0.12
USP38-201ENST00000307017 KIAA1107Q9UPP5 1409 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 ZNF131P52739 623 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 C8orf34Q49A92 452 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 RPUSD2Q8IZ73 545 aaKnown RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 TCHPQ9BT92 498 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 SELENOOQ9BVL4 669 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 NCOA5Q9HCD5 579 aaKnown RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 CWF19L2Q2TBE0 894 aaKnown RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 ANKS4BQ8N8V4 417 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 ARAP1Q96P48 1450 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 LRPPRCP42704 1394 aaKnown RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 CETN1Q12798 172 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 FAM114A1Q8IWE2 563 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 SSX2IPQ9Y2D8 614 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 GADD45BO75293 160 aaPredicted RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 ZYXQ15942 572 aaKnown RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 TRIM68Q6AZZ1 485 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 SEC23IPQ9Y6Y8 1000 aaKnown RBP14.3□□□□□ -0.12
USP38-201ENST00000307017 MCM5P33992 734 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 TNNI2P48788 182 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 EVCP57679 992 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 CAPN12Q6ZSI9 719 aa14.3□□□□□ -0.12
USP38-201ENST00000307017 ZNF692Q9BU19 519 aaPredicted RBP14.29□□□□□ -0.12
USP38-201ENST00000307017 FAM13AO94988 1023 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 VEZTQ9HBM0 779 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP38-201ENST00000307017 BUB1BO60566 1050 aaPredicted RBP14.29□□□□□ -0.12
USP38-201ENST00000307017 NBPF11Q86T75 865 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.29□□□□□ -0.12
USP38-201ENST00000307017 C8orf58Q8NAV2 365 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 ZNF287Q9HBT7 754 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 CDK13Q14004 1512 aaKnown RBP14.29□□□□□ -0.12
USP38-201ENST00000307017 PRIMPOLQ96LW4 560 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 ESYT1Q9BSJ8 1104 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 MYL10Q9BUA6 226 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 HSPA1LP34931 641 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 CYLC1P35663 651 aaPredicted RBP14.29□□□□□ -0.12
USP38-201ENST00000307017 GBP6Q6ZN66 633 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 KLHL7Q8IXQ5 586 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 MRPS27Q92552 414 aaKnown RBP14.29□□□□□ -0.12
USP38-201ENST00000307017 USTQ9Y2C2 406 aa14.29□□□□□ -0.12
USP38-201ENST00000307017 NSRP1Q9H0G5 558 aaKnown RBP14.29□□□□□ -0.12
USP38-201ENST00000307017 DISP3Q9P2K9 1392 aa14.28□□□□□ -0.12
USP38-201ENST00000307017 CADPSQ9ULU8 1353 aa14.28□□□□□ -0.12
USP38-201ENST00000307017 FBXO31Q5XUX0 539 aaPredicted RBP14.28□□□□□ -0.12
USP38-201ENST00000307017 SMC1BQ8NDV3 1235 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms