RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 CEP83Q9Y592 693 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 COL17A1Q9UMD9 1497 aaPredicted RBP8.66□□□□□ -1.02
SF3B3-201ENST00000302516 HLA-DOAP06340 250 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 KRT13P13646 458 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 ATP11AP98196 1134 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 C8orf34Q49A92 452 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 DNAJC21Q5F1R6 531 aaKnown RBP8.66□□□□□ -1.02
SF3B3-201ENST00000302516 PPP1R42Q7Z4L9 355 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 ANKRD44Q8N8A2 993 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 ALDH1L1O75891 902 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 MCMDC2Q4G0Z9 681 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 MKRN1Q9UHC7 482 aaKnown RBP8.66□□□□□ -1.02
SF3B3-201ENST00000302516 KDM5DQ9BY66 1539 aa8.66□□□□□ -1.02
SF3B3-201ENST00000302516 ARHGAP25P42331 645 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 MAPK8IP2Q13387 824 aaPredicted RBP8.65□□□□□ -1.02
SF3B3-201ENST00000302516 AFAP1L1Q8TED9 768 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 DDX23Q9BUQ8 820 aaKnown RBP8.65□□□□□ -1.02
SF3B3-201ENST00000302516 SYCP2Q9BX26 1530 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 SPTLC2O15270 562 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 PDE1AP54750 535 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 GBP1P32455 592 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 MXRA7P84157 204 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 CCDC186Q7Z3E2 898 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 DDX54Q8TDD1 881 aaKnown RBP8.65□□□□□ -1.02
SF3B3-201ENST00000302516 WASLO00401 505 aaPredicted RBP8.65□□□□□ -1.02
SF3B3-201ENST00000302516 PRC1O43663 620 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 NUTM2AQ8IVF1 878 aaPredicted RBP8.65□□□□□ -1.02
SF3B3-201ENST00000302516 TRIM7Q9C029 511 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 VPS18Q9P253 973 aa8.65□□□□□ -1.02
SF3B3-201ENST00000302516 USH1CQ9Y6N9 552 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 TEX14Q8IWB6 1497 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 MAP3K9P80192 1104 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 GUCY1B3Q02153 619 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 VWA3BQ502W6 1294 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 ATRIPQ8WXE1 791 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 SCLT1Q96NL6 688 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 TTF2Q9UNY4 1162 aaKnown RBP8.65□□□□□ -1.03
SF3B3-201ENST00000302516 WDR62O43379 1518 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 NEK11Q8NG66 645 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 CCDC114Q96M63 670 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 NAP1L4Q99733 375 aaKnown RBP8.65□□□□□ -1.03
SF3B3-201ENST00000302516 GDPD2Q9HCC8 539 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 SSX2IPQ9Y2D8 614 aa8.65□□□□□ -1.03
SF3B3-201ENST00000302516 SETSIPP0DME0 302 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 ALG1Q9BT22 464 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 CIB2O75838 187 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 MICALL1Q8N3F8 863 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 CCDC97Q96F63 343 aaPredicted RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 RBM28Q9NW13 759 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 STK24Q9Y6E0 443 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 CPLX4Q7Z7G2 160 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 CCDC42Q96M95 316 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 KRT2P35908 639 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 CCDC26Q8TAB7 109 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 UBXN1Q04323 297 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 IFIT1BQ5T764 474 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 RPGRQ92834 1020 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 CSRNP2Q9H175 543 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 SYNCQ9H7C4 482 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 DHX37Q8IY37 1157 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 PUS7Q96PZ0 661 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 TMX1Q9H3N1 280 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 POLR1AO95602 1720 aaPredicted RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 SYNMO15061 1565 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 PRIM1P49642 420 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 FAM160A1Q05DH4 1040 aa8.64□□□□□ -1.03
SF3B3-201ENST00000302516 GPR161Q8N6U8 529 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 LLPHQ9BRT6 129 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 TFIP11Q9UBB9 837 aaKnown RBP8.64□□□□□ -1.03
SF3B3-201ENST00000302516 BLMP54132 1417 aaPredicted RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 ABCA5Q8WWZ7 1642 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 TRIM75PA6NK02 468 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 IGHDP01880 384 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 RHPN1Q8TCX5 695 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 KLF18A0A0U1RQI7 1052 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 ERCC6LQ2NKX8 1250 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 TSKSQ9UJT2 592 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 GIGYF1O75420 1035 aaPredicted RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 IDEP14735 1019 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 ZBTB16Q05516 673 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 PPP2R3AQ06190 1150 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 CCDC8Q9H0W5 538 aaPredicted RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 MIS18AQ9NYP9 233 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 AKR1B15C9JRZ8 316 aaPredicted RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 SPATS2Q86XZ4 545 aaKnown RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 DACT1Q9NYF0 836 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 MTUS1Q9ULD2 1270 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 CD109Q6YHK3 1445 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 GPATCH8Q9UKJ3 1502 aaKnown RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 TSPY2A6NKD2 308 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 RUFY3Q7L099 469 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 DNAJC25Q9H1X3 360 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 COMMD10Q9Y6G5 202 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 SSH2Q76I76 1423 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 EIF4G3O43432 1585 aaKnown RBP8.63□□□□□ -1.03
SF3B3-201ENST00000302516 FYB2Q5VWT5 728 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 MYRIPQ8NFW9 859 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 RAB3IL1Q8TBN0 382 aa8.63□□□□□ -1.03
SF3B3-201ENST00000302516 THUMPD2Q9BTF0 503 aaKnown RBP8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms