RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 ZNF589Q86UQ0 364 aaPredicted RBP18.71■□□□□ 0.59
LSM6-201ENST00000296581 CCDC24Q8N4L8 307 aa18.71■□□□□ 0.59
LSM6-201ENST00000296581 ZAP70P43403 619 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 PHKA1P46020 1223 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 GSE1Q14687 1217 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 MCMDC2Q4G0Z9 681 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 PRR5LQ6MZQ0 368 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 HELLSQ9NRZ9 838 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 CHGBP05060 677 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 RPS8P62241 208 aaKnown RBP18.7■□□□□ 0.58
LSM6-201ENST00000296581 NECTIN1Q15223 517 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 ZMYM1Q5SVZ6 1142 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 SNX14Q9Y5W7 946 aa18.7■□□□□ 0.58
LSM6-201ENST00000296581 RNF113AO15541 343 aaKnown RBP18.69■□□□□ 0.58
LSM6-201ENST00000296581 LRRFIP1Q32MZ4 808 aaKnown RBP18.69■□□□□ 0.58
LSM6-201ENST00000296581 TFCP2L1Q9NZI6 479 aa18.69■□□□□ 0.58
LSM6-201ENST00000296581 MINPP1Q9UNW1 487 aa18.69■□□□□ 0.58
LSM6-201ENST00000296581 SNAP23O00161 211 aa18.69■□□□□ 0.58
LSM6-201ENST00000296581 NPHP1O15259 732 aa18.69■□□□□ 0.58
LSM6-201ENST00000296581 RBM8AQ9Y5S9 174 aaKnown RBP18.69■□□□□ 0.58
LSM6-201ENST00000296581 SERPINB2P05120 415 aa18.68■□□□□ 0.58
LSM6-201ENST00000296581 PI16Q6UXB8 463 aa18.68■□□□□ 0.58
LSM6-201ENST00000296581 RASEFQ8IZ41 740 aa18.68■□□□□ 0.58
LSM6-201ENST00000296581 FAM43AQ8N2R8 423 aa18.68■□□□□ 0.58
LSM6-201ENST00000296581 ZFYP08048 801 aaPredicted RBP18.67■□□□□ 0.58
LSM6-201ENST00000296581 UBE4AQ14139 1066 aa18.67■□□□□ 0.58
LSM6-201ENST00000296581 FLAD1Q8NFF5 587 aa18.67■□□□□ 0.58
LSM6-201ENST00000296581 SEC62Q99442 399 aaKnown RBP18.67■□□□□ 0.58
LSM6-201ENST00000296581 NEK4P51957 841 aa18.67■□□□□ 0.58
LSM6-201ENST00000296581 DDR1Q08345 913 aa18.67■□□□□ 0.58
LSM6-201ENST00000296581 TTF1Q15361 905 aaPredicted RBP18.67■□□□□ 0.58
LSM6-201ENST00000296581 SLKQ9H2G2 1235 aaPredicted RBP18.67■□□□□ 0.58
LSM6-201ENST00000296581 POLRMTO00411 1230 aaKnown RBP18.66■□□□□ 0.58
LSM6-201ENST00000296581 PRPF40BQ6NWY9 871 aaKnown RBP18.66■□□□□ 0.58
LSM6-201ENST00000296581 COL23A1Q86Y22 540 aaPredicted RBP18.66■□□□□ 0.58
LSM6-201ENST00000296581 CYP2E1P05181 493 aaPredicted RBP18.66■□□□□ 0.58
LSM6-201ENST00000296581 ST5P78524 1137 aa18.66■□□□□ 0.58
LSM6-201ENST00000296581 HMG20BQ9P0W2 317 aa18.66■□□□□ 0.58
LSM6-201ENST00000296581 DOCK2Q92608 1830 aa18.66■□□□□ 0.58
LSM6-201ENST00000296581 MYO5AQ9Y4I1 1855 aaKnown RBP18.65■□□□□ 0.58
LSM6-201ENST00000296581 NRXN2Q9P2S2 1712 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 MCM2P49736 904 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 CRY2Q49AN0 593 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 CREB3L3Q68CJ9 461 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 CCDC129Q6ZRS4 1044 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 SLFNL1Q499Z3 407 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 SPRYD3Q8NCJ5 442 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 ANKRD2Q9GZV1 360 aa18.65■□□□□ 0.58
LSM6-201ENST00000296581 ZNF804BA4D1E1 1349 aa18.64■□□□□ 0.58
LSM6-201ENST00000296581 MAST3O60307 1309 aa18.64■□□□□ 0.58
LSM6-201ENST00000296581 DDIT3P35638 169 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 KCNJ4P48050 445 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 GRAPQ13588 217 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 RASGRF1Q13972 1273 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 NLGN1Q8N2Q7 840 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 SPATA5Q8NB90 893 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 GRAPLQ8TC17 118 aaPredicted RBP18.64■□□□□ 0.57
LSM6-201ENST00000296581 TM6SF1Q9BZW5 370 aa18.64■□□□□ 0.57
LSM6-201ENST00000296581 SLC27A2O14975 620 aa18.63■□□□□ 0.57
LSM6-201ENST00000296581 BCAMP50895 628 aa18.63■□□□□ 0.57
LSM6-201ENST00000296581 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.63■□□□□ 0.57
LSM6-201ENST00000296581 PIH1D3Q9NQM4 214 aaKnown RBP18.63■□□□□ 0.57
LSM6-201ENST00000296581 ZKSCAN1P17029 563 aaPredicted RBP18.63■□□□□ 0.57
LSM6-201ENST00000296581 RNF20Q5VTR2 975 aa18.63■□□□□ 0.57
LSM6-201ENST00000296581 ZSCAN25Q6NSZ9 544 aa18.63■□□□□ 0.57
LSM6-201ENST00000296581 APPBP2Q92624 585 aa18.63■□□□□ 0.57
LSM6-201ENST00000296581 UPF3BQ9BZI7 483 aaKnown RBP18.63■□□□□ 0.57
LSM6-201ENST00000296581 U3KPZ7 1027 aaPredicted RBP18.63■□□□□ 0.57
LSM6-201ENST00000296581 PNPLA7Q6ZV29 1317 aa18.63■□□□□ 0.57
LSM6-201ENST00000296581 TSGA10IPQ3SY00 556 aa18.62■□□□□ 0.57
LSM6-201ENST00000296581 OSBP2Q969R2 916 aa18.62■□□□□ 0.57
LSM6-201ENST00000296581 DSCC1Q9BVC3 393 aa18.62■□□□□ 0.57
LSM6-201ENST00000296581 CAMKK2Q96RR4 588 aa18.62■□□□□ 0.57
LSM6-201ENST00000296581 KLRG2A4D1S0 409 aaPredicted RBP18.61■□□□□ 0.57
LSM6-201ENST00000296581 M0R2C6 588 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 ADD2P35612 726 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 TTC14Q96N46 770 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 RPAP1Q9BWH6 1393 aaPredicted RBP18.61■□□□□ 0.57
LSM6-201ENST00000296581 ANKRD31Q8N7Z5 1873 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 QSER1Q2KHR3 1735 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 UBE3CQ15386 1083 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 ZSWIM6Q9HCJ5 1215 aa18.61■□□□□ 0.57
LSM6-201ENST00000296581 WTIPA6NIX2 430 aaPredicted RBP18.6■□□□□ 0.57
LSM6-201ENST00000296581 ADCK5Q3MIX3 580 aa18.6■□□□□ 0.57
LSM6-201ENST00000296581 RPGRQ92834 1020 aaKnown RBP18.6■□□□□ 0.57
LSM6-201ENST00000296581 CHMP5Q9NZZ3 219 aa18.6■□□□□ 0.57
LSM6-201ENST00000296581 HOXA10P31260 410 aaPredicted RBP18.6■□□□□ 0.57
LSM6-201ENST00000296581 WASHC4Q2M389 1173 aa18.6■□□□□ 0.57
LSM6-201ENST00000296581 JAKMIP1Q96N16 626 aaKnown RBP18.6■□□□□ 0.57
LSM6-201ENST00000296581 GNL3LQ9NVN8 582 aaKnown RBP18.6■□□□□ 0.57
LSM6-201ENST00000296581 HSP90AA1P07900 732 aaKnown RBP18.59■□□□□ 0.57
LSM6-201ENST00000296581 GYG1P46976 350 aa18.59■□□□□ 0.57
LSM6-201ENST00000296581 CAVIN4Q5BKX8 364 aa18.59■□□□□ 0.57
LSM6-201ENST00000296581 VPS53Q5VIR6 699 aa18.59■□□□□ 0.57
LSM6-201ENST00000296581 FAM84BQ96KN1 310 aaPredicted RBP18.59■□□□□ 0.57
LSM6-201ENST00000296581 ZBTB22O15209 634 aa18.58■□□□□ 0.57
LSM6-201ENST00000296581 HSPD1P10809 573 aaKnown RBP18.58■□□□□ 0.57
LSM6-201ENST00000296581 CASTP20810 708 aaKnown RBP18.58■□□□□ 0.57
LSM6-201ENST00000296581 EZH2Q15910 746 aaKnown RBP18.58■□□□□ 0.57
LSM6-201ENST00000296581 SLC9C2Q5TAH2 1124 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms