RNA–Protein interactions for RNA: ENST00000219281.7

USB1-201, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USB1, Length 2,282 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-201ENST00000219281 CTDNEP1O95476 244 aa20.3■□□□□ 0.84
USB1-201ENST00000219281 HMGB1P09429 215 aaKnown RBP20.3■□□□□ 0.84
USB1-201ENST00000219281 ZSCAN25Q6NSZ9 544 aa20.3■□□□□ 0.84
USB1-201ENST00000219281 CCT2P78371 535 aaKnown RBP20.29■□□□□ 0.84
USB1-201ENST00000219281 CLIP2Q9UDT6 1046 aa20.29■□□□□ 0.84
USB1-201ENST00000219281 PARP4Q9UKK3 1724 aaKnown RBP20.29■□□□□ 0.84
USB1-201ENST00000219281 PTPDC1A2A3K4 754 aa20.29■□□□□ 0.84
USB1-201ENST00000219281 NAA16Q6N069 864 aaPredicted RBP20.29■□□□□ 0.84
USB1-201ENST00000219281 CCAR1Q8IX12 1150 aaKnown RBP20.29■□□□□ 0.84
USB1-201ENST00000219281 PLBD2Q8NHP8 589 aa20.29■□□□□ 0.84
USB1-201ENST00000219281 PAG1Q9NWQ8 432 aa20.29■□□□□ 0.84
USB1-201ENST00000219281 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.28■□□□□ 0.84
USB1-201ENST00000219281 A0A0G2JLW4 131 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 PPFIA3O75145 1194 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 TIMM10P62072 90 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 FOXO4P98177 505 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 HELLSQ9NRZ9 838 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 EXOSC10Q01780 885 aaKnown RBP20.28■□□□□ 0.84
USB1-201ENST00000219281 C11orf57Q6ZUT1 292 aaPredicted RBP20.28■□□□□ 0.84
USB1-201ENST00000219281 GOLPH3LQ9H4A5 285 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 RCOR1Q9UKL0 485 aa20.28■□□□□ 0.84
USB1-201ENST00000219281 NAP1L2Q9ULW6 460 aaPredicted RBP20.28■□□□□ 0.84
USB1-201ENST00000219281 NHSL1Q5SYE7 1610 aa20.27■□□□□ 0.84
USB1-201ENST00000219281 ATG9AQ7Z3C6 839 aa20.27■□□□□ 0.84
USB1-201ENST00000219281 PALLDQ8WX93 1383 aa20.27■□□□□ 0.84
USB1-201ENST00000219281 AFDNP55196 1824 aaKnown RBP20.27■□□□□ 0.83
USB1-201ENST00000219281 CAVIN2O95810 425 aa20.27■□□□□ 0.83
USB1-201ENST00000219281 A1BGP04217 495 aa20.27■□□□□ 0.83
USB1-201ENST00000219281 IQCB1Q15051 598 aa20.27■□□□□ 0.83
USB1-201ENST00000219281 DSCC1Q9BVC3 393 aa20.27■□□□□ 0.83
USB1-201ENST00000219281 NCOA5Q9HCD5 579 aaKnown RBP20.27■□□□□ 0.83
USB1-201ENST00000219281 GOLGA6L19H0YKK7 550 aa20.26■□□□□ 0.83
USB1-201ENST00000219281 CCDC144BQ3MJ40 725 aa20.26■□□□□ 0.83
USB1-201ENST00000219281 PPP4R3BQ5MIZ7 849 aa20.26■□□□□ 0.83
USB1-201ENST00000219281 CCDC144CPQ8IYA2 1237 aa20.26■□□□□ 0.83
USB1-201ENST00000219281 CACTINQ8WUQ7 758 aaKnown RBP20.26■□□□□ 0.83
USB1-201ENST00000219281 C16orf45Q96MC5 204 aaPredicted RBP20.26■□□□□ 0.83
USB1-201ENST00000219281 USP28Q96RU2 1077 aa20.26■□□□□ 0.83
USB1-201ENST00000219281 E7EWF7 191 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 ZMYM1Q5SVZ6 1142 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 TTLL7Q6ZT98 887 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 CHST3Q7LGC8 479 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 H7C1W4 665 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 GUCY1B3Q02153 619 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 BTG4Q9NY30 223 aa20.25■□□□□ 0.83
USB1-201ENST00000219281 SHANK3Q9BYB0 1731 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 CTAGE5O15320 804 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 HSPD1P10809 573 aaKnown RBP20.24■□□□□ 0.83
USB1-201ENST00000219281 SNW1Q13573 536 aaKnown RBP20.24■□□□□ 0.83
USB1-201ENST00000219281 STX1AQ16623 288 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 SMAP1Q8IYB5 467 aaPredicted RBP20.24■□□□□ 0.83
USB1-201ENST00000219281 AGXT2Q9BYV1 514 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 KCPQ6ZWJ8 1503 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 CTIFO43310 598 aaKnown RBP20.24■□□□□ 0.83
USB1-201ENST00000219281 CDC25BP30305 580 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 CCDC73Q6ZRK6 1079 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 ZNF396Q96N95 335 aaPredicted RBP20.24■□□□□ 0.83
USB1-201ENST00000219281 PRDM10Q9NQV6 1147 aa20.24■□□□□ 0.83
USB1-201ENST00000219281 ARFGEF2Q9Y6D5 1785 aa20.23■□□□□ 0.83
USB1-201ENST00000219281 A0A087WWV3 80 aa20.23■□□□□ 0.83
USB1-201ENST00000219281 TNNT1P13805 278 aa20.23■□□□□ 0.83
USB1-201ENST00000219281 PDIA3P30101 505 aaKnown RBP20.23■□□□□ 0.83
USB1-201ENST00000219281 LRRC24Q50LG9 513 aa20.23■□□□□ 0.83
USB1-201ENST00000219281 PDCL2Q8N4E4 241 aa20.23■□□□□ 0.83
USB1-201ENST00000219281 ZNF594Q96JF6 807 aaPredicted RBP20.23■□□□□ 0.83
USB1-201ENST00000219281 IFIT1P09914 478 aaKnown RBP20.22■□□□□ 0.83
USB1-201ENST00000219281 SARM1Q6SZW1 724 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 ILDR1Q86SU0 546 aaPredicted RBP20.22■□□□□ 0.83
USB1-201ENST00000219281 MAST3O60307 1309 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 SALL1Q9NSC2 1324 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 KINO60870 393 aaKnown RBP20.22■□□□□ 0.83
USB1-201ENST00000219281 IL15P40933 162 aaPredicted RBP20.22■□□□□ 0.83
USB1-201ENST00000219281 ME1P48163 572 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 CBX1P83916 185 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 TPD52L1Q16890 204 aaPredicted RBP20.22■□□□□ 0.83
USB1-201ENST00000219281 ENGASEQ8NFI3 743 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 ANKRD7Q92527 254 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 GPR108Q9NPR9 543 aa20.22■□□□□ 0.83
USB1-201ENST00000219281 CWC25Q9NXE8 425 aaPredicted RBP20.22■□□□□ 0.83
USB1-201ENST00000219281 UBR2Q8IWV8 1755 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 RNF113AO15541 343 aaKnown RBP20.21■□□□□ 0.83
USB1-201ENST00000219281 ATP2B3Q16720 1220 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 TTLL5Q6EMB2 1281 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 FSIP1Q8NA03 581 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 ZNF274Q96GC6 653 aaPredicted RBP20.21■□□□□ 0.83
USB1-201ENST00000219281 TNS2Q63HR2 1409 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 LAMA4Q16363 1823 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 LAMB4A4D0S4 1761 aa20.21■□□□□ 0.83
USB1-201ENST00000219281 BECN2A8MW95 431 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 M0R2C6 588 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 FAM160A1Q05DH4 1040 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 ARID5BQ14865 1188 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 ATL3Q6DD88 541 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 SMTNL1A8MU46 457 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 LRRC8AQ8IWT6 810 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 ERCC4Q92889 916 aaPredicted RBP20.2■□□□□ 0.82
USB1-201ENST00000219281 MRFAP1L1Q96HT8 127 aa20.2■□□□□ 0.82
USB1-201ENST00000219281 A0A1B0GUL7 405 aa20.19■□□□□ 0.82
USB1-201ENST00000219281 EYA2O00167 538 aa20.19■□□□□ 0.82
USB1-201ENST00000219281 DHX40Q8IX18 779 aaKnown RBP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms