RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CEP57Q86XR8 500 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 ZFYVE9O95405 1425 aa16.91■□□□□ 0.3
PTPRA-201ENST00000216877 MARF1Q9Y4F3 1742 aaKnown RBP16.9■□□□□ 0.3
PTPRA-201ENST00000216877 PTH1RQ03431 593 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 TTC19Q6DKK2 380 aaPredicted RBP16.9■□□□□ 0.3
PTPRA-201ENST00000216877 BLOC1S2Q6QNY1 142 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 EID1Q9Y6B2 187 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 TOPAZ1Q8N9V7 1692 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 A0A1B0GVL5 298 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 UBASH3AP57075 661 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 PPARDQ03181 441 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 FAM43BQ6ZT52 329 aaPredicted RBP16.9■□□□□ 0.3
PTPRA-201ENST00000216877 ABCB6Q9NP58 842 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 PARP3Q9Y6F1 533 aa16.9■□□□□ 0.3
PTPRA-201ENST00000216877 HNRNPH1P31943 449 aaKnown RBP16.89■□□□□ 0.29
PTPRA-201ENST00000216877 DHX40Q8IX18 779 aaKnown RBP16.89■□□□□ 0.29
PTPRA-201ENST00000216877 RUFY2Q8WXA3 655 aa16.89■□□□□ 0.29
PTPRA-201ENST00000216877 OSBPL3Q9H4L5 887 aa16.89■□□□□ 0.29
PTPRA-201ENST00000216877 CAPN7Q9Y6W3 813 aa16.89■□□□□ 0.29
PTPRA-201ENST00000216877 FYB1O15117 783 aa16.89■□□□□ 0.29
PTPRA-201ENST00000216877 HINFPQ9BQA5 517 aa16.89■□□□□ 0.29
PTPRA-201ENST00000216877 IRX2Q9BZI1 471 aaPredicted RBP16.89■□□□□ 0.29
PTPRA-201ENST00000216877 ZSCAN16Q9H4T2 348 aaPredicted RBP16.89■□□□□ 0.29
PTPRA-201ENST00000216877 ZNF142P52746 1687 aaPredicted RBP16.89■□□□□ 0.29
PTPRA-201ENST00000216877 NF2P35240 595 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 TXLNAP40222 546 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 PRPF38AQ8NAV1 312 aaKnown RBP16.88■□□□□ 0.29
PTPRA-201ENST00000216877 LRRC2Q9BYS8 371 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 PSD3Q9NYI0 1048 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 INPP5BP32019 993 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 DPCR1Q3MIW9 517 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 STK31Q9BXU1 1019 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 SAMM50Q9Y512 469 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 RIMS1Q86UR5 1692 aaKnown RBP16.88■□□□□ 0.29
PTPRA-201ENST00000216877 CTAGE5O15320 804 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 ATP1A3P13637 1013 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 SARNPP82979 210 aaKnown RBP16.88■□□□□ 0.29
PTPRA-201ENST00000216877 RNF217Q8TC41 542 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 RABGGTAQ92696 567 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 PHLPP2Q6ZVD8 1323 aa16.88■□□□□ 0.29
PTPRA-201ENST00000216877 EIF5P55010 431 aaKnown RBP16.87■□□□□ 0.29
PTPRA-201ENST00000216877 VPS53Q5VIR6 699 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 CPLX3Q8WVH0 158 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 CCDC196A0A1B0GTZ2 297 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 PPFIA4O75335 1185 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 SSBP05455 408 aaKnown RBP eCLIP16.87■□□□□ 0.29
PTPRA-201ENST00000216877 AFAP1L1Q8TED9 768 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 CCDC151A5D8V7 595 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 KIF1CO43896 1103 aaKnown RBP16.87■□□□□ 0.29
PTPRA-201ENST00000216877 KIAA0754O94854 1291 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 CEP89Q96ST8 783 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 IMPACTQ9P2X3 320 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 PPP2R2CQ9Y2T4 447 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 TULP4Q9NRJ4 1543 aa16.87■□□□□ 0.29
PTPRA-201ENST00000216877 CALRP27797 417 aaKnown RBP16.86■□□□□ 0.29
PTPRA-201ENST00000216877 FANCCQ00597 558 aa16.86■□□□□ 0.29
PTPRA-201ENST00000216877 N4BP2L2Q92802 583 aaPredicted RBP16.86■□□□□ 0.29
PTPRA-201ENST00000216877 EMILIN1Q9Y6C2 1016 aa16.86■□□□□ 0.29
PTPRA-201ENST00000216877 RNF187Q5TA31 235 aaPredicted RBP16.86■□□□□ 0.29
PTPRA-201ENST00000216877 NBPF6Q5VWK0 638 aa16.86■□□□□ 0.29
PTPRA-201ENST00000216877 NBPF4Q96M43 638 aa16.86■□□□□ 0.29
PTPRA-201ENST00000216877 LSG1Q9H089 658 aaKnown RBP16.86■□□□□ 0.29
PTPRA-201ENST00000216877 TTC41PQ6P2S7 1318 aa16.86■□□□□ 0.29
PTPRA-201ENST00000216877 MED14O60244 1454 aa16.86■□□□□ 0.29
PTPRA-201ENST00000216877 EGFL6Q8IUX8 553 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 MPHOSPH8Q99549 860 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 PTCH1Q13635 1447 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 NCBP3Q53F19 620 aaKnown RBP16.85■□□□□ 0.29
PTPRA-201ENST00000216877 KIRREL3Q8IZU9 778 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 RIN2Q8WYP3 895 aaPredicted RBP16.85■□□□□ 0.29
PTPRA-201ENST00000216877 NRKQ7Z2Y5 1582 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 RNF40O75150 1001 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 BRD3Q15059 726 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 TICAM2Q86XR7 235 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 OSBPL5Q9H0X9 879 aaPredicted RBP16.85■□□□□ 0.29
PTPRA-201ENST00000216877 RBM8AQ9Y5S9 174 aaKnown RBP16.85■□□□□ 0.29
PTPRA-201ENST00000216877 ADAMTSL3P82987 1691 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 FER1L4A9Z1Z3 1794 aa16.85■□□□□ 0.29
PTPRA-201ENST00000216877 TFRCP02786 760 aaKnown RBP16.84■□□□□ 0.29
PTPRA-201ENST00000216877 ADKP55263 362 aaKnown RBP16.84■□□□□ 0.29
PTPRA-201ENST00000216877 CASP8Q14790 479 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 SUGP1Q8IWZ8 645 aaKnown RBP16.84■□□□□ 0.29
PTPRA-201ENST00000216877 KAT2BQ92831 832 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 ZBTB12Q9Y330 459 aaPredicted RBP16.84■□□□□ 0.29
PTPRA-201ENST00000216877 FAM169AQ9Y6X4 670 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 TUBB4AP04350 444 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 NAIF1Q69YI7 327 aaPredicted RBP16.84■□□□□ 0.29
PTPRA-201ENST00000216877 FAM107BQ9H098 131 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 GOLPH3LQ9H4A5 285 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 MED4Q9NPJ6 270 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 CABP1Q9NZU7 370 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 SHTN1A0MZ66 631 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 UBTFL1P0CB47 393 aaPredicted RBP16.84■□□□□ 0.29
PTPRA-201ENST00000216877 TRIM65Q6PJ69 517 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 ERC1Q8IUD2 1116 aa16.84■□□□□ 0.29
PTPRA-201ENST00000216877 PSMA5P28066 241 aa16.83■□□□□ 0.29
PTPRA-201ENST00000216877 STK11IPQ8N1F8 1099 aa16.83■□□□□ 0.29
PTPRA-201ENST00000216877 IQUBQ8NA54 791 aa16.83■□□□□ 0.29
PTPRA-201ENST00000216877 SLC3A2P08195 630 aaKnown RBP16.83■□□□□ 0.28
PTPRA-201ENST00000216877 STK38Q15208 465 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms