RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 NXT1Q9UKK6 140 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 FOXJ3Q9UPW0 622 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 ISLRO14498 428 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SEC11BP0C7V7 166 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 UGCGQ16739 394 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM121BQ9BXQ6 578 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 REG4Q9BYZ8 158 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 IER3IP1Q9Y5U9 82 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SCN3AQ9NY46 2000 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3DA0A087WVF3 549 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3IA0A087WXS9 549 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3EA0A087X179 549 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3LB9A6J9 549 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 G3V3Y1 287 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SIRPB1O00241 398 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 EMP2P54851 167 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 MRPS6P82932 125 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3CQ6IPX1 549 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 AGTRAPQ6RW13 159 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TBC1D3Q8IZP1 549 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 CFAP52Q8N1V2 620 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 CISD2Q8N5K1 135 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TEX37Q96LM6 180 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 WTIPA6NIX2 430 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 ELAVL4P26378 380 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SLC6A9P48067 706 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 C15orf39Q6ZRI6 1047 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 ARL14EPQ8N8R7 260 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 OR5A1Q8NGJ0 315 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 PCGF1Q9BSM1 259 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 ADGRL4Q9HBW9 690 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 FBXL17Q9UF56 701 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 PPT2Q9UMR5 302 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 GABRQQ9UN88 632 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 H3BMH7 237 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 PSEN2P49810 448 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 RPS20P60866 119 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SLC25A42Q86VD7 318 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 OR51A2Q8NGJ7 313 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TSSK2Q96PF2 358 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SOX7Q9BT81 388 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 RIF1Q5UIP0 2472 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 NXPH2O95156 264 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 HOXC4P09017 264 aaPredicted RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 LIPCP11150 499 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 HOXA9P31269 272 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SNRPNP63162 240 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SLC25A34Q6PIV7 304 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 ANAPC13Q9BS18 74 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 MENTQ9BUN1 341 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 TRMT61BQ9BVS5 477 aaKnown RBP4.5□□□□□ -1.69
VPS13D-213ENST00000613099 SEMA6CQ9H3T2 930 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 CACNA1BQ00975 2339 aa4.5□□□□□ -1.69
VPS13D-213ENST00000613099 LEFTY2O00292 366 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 GCM2O75603 506 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 RHBDL1O75783 438 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ZNF85Q03923 595 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM249Q2WGJ8 235 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 EOGTQ5NDL2 527 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 LEG1Q6P5S2 330 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SLC22A24Q8N4F4 322 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 OR52B4Q8NGK2 314 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 ELOVL3Q9HB03 270 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 KLK11Q9UBX7 282 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 FUT9Q9Y231 359 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM238LA0A1B0GVL6 79 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MPIG6BO95866 241 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 GSTP1P09211 210 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SDC1P18827 310 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CCR2P41597 374 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 EFNA3P52797 238 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 OLIG2Q13516 323 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 C1orf220Q5T0J3 134 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CST9Q5W186 159 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 VITQ6UXI7 678 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CHST14Q8NCH0 376 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CPT1CQ8TCG5 803 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 NEURL3Q96EH8 262 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SLC23A2Q9UGH3 650 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TNFRSF1BP20333 461 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SOWAHAQ2M3V2 549 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 RSPO2Q6UXX9 243 aaPredicted RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 MRGPRGQ86SM5 289 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 SELENOHQ8IZQ5 122 aaKnown RBP4.49□□□□□ -1.69
VPS13D-213ENST00000613099 CLEC1AQ8NC01 280 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM204Q9BSN7 226 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 JKAMPQ9P055 326 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 OR51B2Q9Y5P1 312 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HCRTR1O43613 425 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PLPP2O43688 288 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 HMGA2P52926 109 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM33P57088 247 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 PLCXD3Q63HM9 321 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 WDTC1Q8N5D0 677 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 TMEM186Q96B77 213 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 AMDHD1Q96NU7 426 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 F2RL3Q96RI0 385 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 YIPF1Q9Y548 306 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 COL18A1P39060 1754 aa4.49□□□□□ -1.69
VPS13D-213ENST00000613099 GOSR1O95249 250 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms