RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 DMRTB1Q96MA1 342 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 LINC00052Q96N35 136 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 RYDENQ9NUL5 291 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 GNG13Q9P2W3 67 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 RNF114Q9Y508 228 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 POLR2AP24928 1970 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CHRM2P08172 466 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 NAT2P11245 290 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 DTYMKP23919 212 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 TMEM236Q5W0B7 351 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 MDP1Q86V88 176 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 ARIH2OSQ8N7S6 290 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 OR51H1Q8NH63 302 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 COX14Q96I36 57 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CBLN4Q9NTU7 201 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 LRRC42Q9Y546 428 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 HS3ST3B1Q9Y662 390 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 A0A1W2PR77 199 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 F6UZH7 168 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 GYPAP02724 150 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 OXA1LQ15070 435 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 TESK1Q15569 626 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 LCN8Q6JVE9 175 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CCDC190Q86UF4 302 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF511Q8NB15 262 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC37A3Q8NCC5 494 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 PFN4Q8NHR9 129 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 SF3B5Q9BWJ5 86 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 MSL2Q9HCI7 577 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 GDF2Q9UK05 429 aaPredicted RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CES1P1Q9UKY3 287 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 ZDHHC8Q9ULC8 765 aa8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 AK6Q9Y3D8 172 aaKnown RBP8.19□□□□□ -1.1
LIMCH1-202ENST00000381753 CEP290O15078 2479 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 A0A087WUJ7 227 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OR7A17O14581 309 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OPN1MWP04001 364 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 CTXN2P0C2S0 81 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OPN1MW2P0DN77 364 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OPN1MW3P0DN78 364 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ALDH3B2P48448 385 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 TRAT1Q6PIZ9 186 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC16A13Q7RTY0 426 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ADGRG3Q86Y34 549 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM58AQ8N1B3 248 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 FAM110DQ8TAY7 271 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 PPA2Q9H2U2 334 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 MAGIXQ9H6Y5 334 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 IL36GQ9NZH8 169 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 NAGKQ9UJ70 344 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OSGIN1Q9UJX0 560 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 EVPLQ92817 2033 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 H3BMQ9 156 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 FZD6O60353 706 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 NUDT7P0C024 238 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 HNRNPA0Q13151 305 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 DESI1Q6ICB0 168 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SNAPC3Q92966 411 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 NEIL1Q96FI4 390 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 POM121L2Q96KW2 1035 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF300Q96RE9 604 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC38A1Q9H2H9 487 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 EXTL2Q9UBQ6 330 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF225Q9UK10 706 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 LRRC3CA6NJW4 275 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 RNF223E7ERA6 249 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 IGLV3-25P01717 112 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 IGFBP1P08833 259 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 OR8U9P0C7N5 309 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ACP2P11117 423 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 FUT6P51993 359 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 FOXL2P58012 376 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 RPEL1Q2QD12 228 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 GLIPR1L1Q6UWM5 242 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SLC16A12Q6ZSM3 486 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 PACRGLQ8N7B6 248 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 C7orf34Q96L11 122 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 BIRC8Q96P09 236 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 TAAR6Q96RI8 345 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 YTHDF1Q9BYJ9 559 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 DCSTAMPQ9H295 470 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 MED20Q9H944 212 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 GPR84Q9NQS5 396 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 TIMM23O14925 209 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SNCGO76070 127 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SCAF4O95104 1147 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 NTN1O95631 604 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 THBS1P07996 1170 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ZNF17P17021 662 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ACSF3Q4G176 576 aaPredicted RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 TGIF2LYQ8IUE0 185 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 TGIF2LXQ8IUE1 241 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 ATG2BQ96BY7 2078 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 SIRT7Q9NRC8 400 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 C19orf12Q9NSK7 152 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 DDX60LQ5H9U9 1706 aaKnown RBP8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 RP2O75695 350 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 NGFP01138 241 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 PATE4P0C8F1 98 aa8.18□□□□□ -1.1
LIMCH1-202ENST00000381753 UBBP0CG47 229 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 91.3 ms