RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 ST8SIA4Q92187 359 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 NABP1Q96AH0 204 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 RAB3CQ96E17 227 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 IER2Q9BTL4 223 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TMEM59Q9BXS4 323 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 SH2D2AQ9NP31 389 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 RDH8Q9NYR8 311 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 PLEKHA6Q9Y2H5 1048 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 FAM25EA8MYX2 175 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 RAD51DO75771 328 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 IFNA6P05013 189 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 FAHP16930 419 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TMEM50BP56557 158 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 LSM6P62312 80 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TRA2AQ13595 282 aaKnown RBP eCLIP16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 RSPO1Q2MKA7 263 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TCEAL6Q6IPX3 200 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 ZIC4Q8N9L1 334 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 GJC3Q8NFK1 279 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 OR10K1Q8NGX5 313 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TCEAL3Q969E4 200 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 TMEM54Q969K7 222 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 CXorf58Q96LI9 332 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 MICU1Q9BPX6 476 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 PDCD10Q9BUL8 212 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 FN3KRPQ9HA64 309 aa16.14■□□□□ 0.17
SHKBP1-201ENST00000291842 DHHO43323 396 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 EIF1BO60739 113 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 CCL1P22362 96 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 VAMP1P23763 118 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 AVPR2P30518 371 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 CLVS2Q5SYC1 327 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 GSG1LQ6UXU4 331 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 RFPL4BQ6ZWI9 263 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 SLC25A42Q86VD7 318 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 TMEM123Q8N131 208 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 OR4K15Q8NH41 348 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 KCNG3Q8TAE7 436 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 ARHGAP5-AS1Q96IT6 56 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 SLC2A8Q9NY64 477 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 C19orf67A6NJJ6 358 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 RFPL4AA6NLU0 287 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 RFPL4AL1F8VTS6 287 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 SPDEFO95238 335 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 ZBTB25P24278 435 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 PRSS12P56730 875 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 Q0VFX4 171 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 ZNF546Q86UE3 836 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 OR5M8Q8NGP6 311 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 CCDC120Q96HB5 630 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 NAA11Q9BSU3 229 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 ULBP2Q9BZM5 246 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 ZNF224Q9NZL3 707 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 FBLN5Q9UBX5 448 aa16.13■□□□□ 0.17
SHKBP1-201ENST00000291842 OR5H14A6NHG9 310 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 CBR3O75828 277 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 CSNK2A1P68400 391 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 IL13RA1P78552 427 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 ATXN7L3Q14CW9 347 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 KISS1Q15726 138 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 MICBQ29980 383 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 C10orf128Q5T292 105 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 KCTD9Q7L273 389 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 LYG2Q86SG7 212 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 MARCH1Q8TCQ1 289 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 FBXO17Q96EF6 278 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 NARFLQ9H6Q4 476 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 MYOZ1Q9NP98 299 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 PLEK2Q9NYT0 353 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 C9orf170A2RU37 121 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 CHRM2P08172 466 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 HIST1H1DP16402 221 aaKnown RBP16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 NTF4P34130 210 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 UBE2V2Q15819 145 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 CLPPQ16740 277 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 FAM209AQ5JX71 171 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 PEAR1Q5VY43 1037 aaPredicted RBP16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 C1orf210Q8IVY1 113 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 DTWD2Q8NBA8 298 aa16.12■□□□□ 0.17
SHKBP1-201ENST00000291842 STMND1H3BQB6 276 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 SCGNO76038 276 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 RFPL3SP0C7P2 107 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 STARP49675 285 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 RAC1P63000 192 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 BEX5Q5H9J7 111 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 CRIP3Q6Q6R5 217 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 OR2W3Q7Z3T1 314 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 OR51T1Q8NGJ9 327 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 OR14L1PQ8NHC6 308 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 PIGTQ969N2 578 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 DMRTA2Q96SC8 542 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 PIGQQ9BRB3 760 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 PIGLQ9Y2B2 252 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 VAMP5O95183 116 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 NR2C1P13056 603 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 TCN2P20062 427 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 SNAI3Q3KNW1 292 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 NAXDQ8IW45 347 aa16.11■□□□□ 0.17
SHKBP1-201ENST00000291842 LRRC20Q8TCA0 184 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms