RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 UBE2MP61081 183 aaKnown RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 CDCP2Q5VXM1 449 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF626Q68DY1 528 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 GLIPR1L1Q6UWM5 242 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 DOK3Q7L591 496 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 UXS1Q8NBZ7 420 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 ALKBH3Q96Q83 286 aaPredicted RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 NICN1Q9BSH3 213 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 GPN1Q9HCN4 374 aaPredicted RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SLC23A1Q9UHI7 598 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SULT1C2O00338 296 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 GNB3P16520 340 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF133P52736 654 aaPredicted RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 FOXO1Q12778 655 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 CDNFQ49AH0 187 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SLC22A6Q4U2R8 563 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 PLXDC2Q6UX71 529 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SEZ6L2Q6UXD5 910 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 TMEM104Q8NE00 496 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 LILRB4Q8NHJ6 448 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 NUDCD2Q8WVJ2 157 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 WDR89Q96FK6 387 aaPredicted RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 GPER1Q99527 375 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SF3B5Q9BWJ5 86 aaKnown RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 EXO5Q9H790 373 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SCPEP1Q9HB40 452 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 PLA2G3Q9NZ20 509 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 SCP2D1Q9UJQ7 156 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 MRPS28Q9Y2Q9 187 aaKnown RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 DNAJC13O75165 2243 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF407Q9C0G0 2248 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 A0A0A6YYH2 397 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 A6NJ64 397 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF736B4DX44 427 aaPredicted RBP14.34□□□□□ -0.11
COL4A1-204ENST00000543140 AMY2AP04746 511 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 PATE4P0C8F1 98 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 CNR1P21554 472 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ITGA3P26006 1051 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 SSBP1Q04837 148 aaKnown RBP14.34□□□□□ -0.11
COL4A1-204ENST00000543140 NKPD1Q17RQ9 610 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF260Q3ZCT1 412 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 FOXL2NBQ6ZUU3 175 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 PGAP1Q75T13 922 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 SLC36A1Q7Z2H8 476 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 FJX1Q86VR8 437 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 GVQW1Q8N7I0 195 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 OR5D18Q8NGL1 313 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 OR14K1Q8NGZ2 314 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 OR2V1Q8NHB1 315 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 AQP3Q92482 292 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 MED30Q96HR3 178 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 SELENOIQ9C0D9 397 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 BANF2Q9H503 90 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 IL17BQ9UHF5 180 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 URB1O60287 2271 aaKnown RBP14.34□□□□□ -0.11
COL4A1-204ENST00000543140 IGKV1-9A0A0C4DH69 117 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 A0A1W2PP11 408 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF716A6NP11 495 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 CCL1P22362 96 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 CTSSP25774 331 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 CAPZA1P52907 286 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 SRYQ05066 204 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ABHD17BQ5VST6 288 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 RAB12Q6IQ22 244 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 IDO2Q6ZQW0 420 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 LINC00696Q6ZRV3 163 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 AAED1Q7RTV5 226 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 TMEM229BQ8NBD8 167 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 ABHD3Q8WU67 409 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 SNAPC3Q92966 411 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 CYYR1Q96J86 154 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 EDEM2Q9BV94 578 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 NPTNQ9Y639 398 aa14.34□□□□□ -0.11
COL4A1-204ENST00000543140 NEURL1O76050 574 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 IL5P05113 134 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 CELA3AP09093 270 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 B4GALT1P15291 398 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 FAHP16930 419 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 SSTR2P30874 369 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 MECP2P51608 486 aaKnown RBP14.33□□□□□ -0.12
COL4A1-204ENST00000543140 SCGB2B2Q4G0G5 96 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 HES3Q5TGS1 186 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 OR52W1Q6IF63 320 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 TRAPPC6BQ86SZ2 158 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 CD163Q86VB7 1156 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF584Q8IVC4 421 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 INTS12Q96CB8 462 aaKnown RBP14.33□□□□□ -0.12
COL4A1-204ENST00000543140 ADGRG7Q96K78 797 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 GPR87Q9BY21 358 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 EIF3KQ9UBQ5 218 aaKnown RBP14.33□□□□□ -0.12
COL4A1-204ENST00000543140 FREM1Q5H8C1 2179 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 G3V3Q6 166 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 M0R135 149 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 DNPH1O43598 174 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 TNFSF15O95150 251 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 MPIG6BO95866 241 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 MRPS34P82930 218 aaKnown RBP14.33□□□□□ -0.12
COL4A1-204ENST00000543140 FAM27BQ5VT28 67 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 ZNF799Q96GE5 643 aa14.33□□□□□ -0.12
COL4A1-204ENST00000543140 LOC100509620A0A075B734 347 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms