RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 DNAH14Q0VDD8 3507 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 IGHV2-5P01817 119 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 H2BFMP0C1H6 154 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 RAP1AP62834 184 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 ANKRD55Q3KP44 614 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 NSUN5P2Q63ZY6 315 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 MED25Q71SY5 747 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 ATG4DQ86TL0 474 aaPredicted RBP11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 RTN4RL2Q86UN3 420 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 HOGA1Q86XE5 327 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 OR56B1Q8NGI3 324 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 C16orf52Q8NHV5 167 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 CTHRC1Q96CG8 243 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 NRSN2Q9GZP1 204 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 GDE1Q9NZC3 331 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 LUZP4Q9P127 313 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 ASAH2BP0C7U1 165 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 CD37P11049 281 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 SLC6A9P48067 706 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 STARD6P59095 220 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 CSNK2A1P68400 391 aaPredicted RBP11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 GLO1Q04760 184 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 C1QL3Q5VWW1 255 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 CATSPERDQ86XM0 798 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 LRRC75AQ8NAA5 344 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 CSNK2A3Q8NEV1 391 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 TM4SF19Q96DZ7 209 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 VSTM2LQ96N03 204 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 NICN1Q9BSH3 213 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 PBDC1Q9BVG4 233 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 BANF2Q9H503 90 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 C5orf66Q9H5L9 145 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 DNAJB11Q9UBS4 358 aa11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 C14orf166Q9Y224 244 aaKnown RBP11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 COA3Q9Y2R0 106 aaPredicted RBP11.47□□□□□ -0.57
SFSWAP-209ENST00000540469 PRSS37A4D1T9 235 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 DBX1A6NMT0 343 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 SYT7O43581 403 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 IFNA21P01568 189 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 CXCL10P02778 98 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 CTLA4P16410 223 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 GLRA1P23415 457 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 TMEM33P57088 247 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 RAB38P57729 211 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 CHRDL2Q6WN34 429 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 HIST2H3AQ71DI3 136 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 DCXRQ7Z4W1 244 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 PRR22Q8IZ63 422 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 METTL27Q8N6F8 245 aaPredicted RBP11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 DTWD2Q8NBA8 298 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 OR52N5Q8NH56 324 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 FNDC9Q8TBE3 224 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 GAL3ST4Q96RP7 486 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 EHFQ9NZC4 300 aa11.46□□□□□ -0.57
SFSWAP-209ENST00000540469 PRSS38A1L453 326 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF264O43296 627 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SLC34A2O95436 690 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 CSF2RAP15509 400 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF20P17024 532 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 TBPP20226 339 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 P2RY4P51582 365 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 RPS21P63220 83 aaKnown RBP11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SSX2Q16385 188 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 PYY3Q5JQD4 70 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SOHLH1Q5JUK2 328 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 KLHL24Q6TFL4 600 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 KDM8Q8N371 416 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SLC22A24Q8N4F4 322 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SUMF2Q8NBJ7 301 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 JSRP1Q96MG2 331 aaPredicted RBP11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 OR5B2Q96R09 309 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SSX3Q99909 188 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 PTGES2Q9H7Z7 377 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 PPP4R1LQ9P1A2 415 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SLC17A4Q9Y2C5 497 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 R4GMQ9 66 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 FANCMQ8IYD8 2048 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 BORCS7-ASMTA0A0B4J1R7 106 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 ZNF878C9JN71 531 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 VSIG8P0DPA2 414 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 IGFALSP35858 605 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 HGFACQ04756 655 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 RHEBQ15382 184 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 RSU1Q15404 277 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 TOMM34Q15785 309 aaPredicted RBP11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 HSD17B11Q8NBQ5 300 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 S100A13Q99584 98 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 OR10A5Q9H207 317 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 SLC26A1Q9H2B4 701 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 PRTFDC1Q9NRG1 225 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 FAM86C1Q9NVL1 165 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 HRASLS2Q9NWW9 162 aa11.46□□□□□ -0.58
SFSWAP-209ENST00000540469 CLDN4O14493 209 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 TXNDC12O95881 172 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 FSTP19883 344 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 CHATP28329 748 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 HTR5AP47898 357 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 FHITP49789 147 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 EGR4Q05215 589 aa11.45□□□□□ -0.58
SFSWAP-209ENST00000540469 UNC119Q13432 240 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms