RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 FBXL14Q8N1E6 418 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 BHLHE23Q8NDY6 225 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 GTF3AQ92664 365 aaKnown RBP11.76□□□□□ -0.53
CD44-224ENST00000526669 COG8Q96MW5 612 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 NR1H4Q96RI1 486 aaPredicted RBP11.76□□□□□ -0.53
CD44-224ENST00000526669 PDCD1LG2Q9BQ51 273 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 PLK3Q9H4B4 646 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 ZNF696Q9H7X3 374 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 PLEKHF2Q9H8W4 249 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 ACOT13Q9NPJ3 140 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 TRIM36Q9NQ86 728 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 TAAR3PQ9P1P4 343 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 APCP25054 2843 aa11.76□□□□□ -0.53
CD44-224ENST00000526669 TRBV2A0A0J9YWF9 115 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 hCG_38984A0A1B0GV85 526 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 LOC107986453A0A1B0GWG9 222 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 TRIM64A6NGJ6 449 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 GGT3PA6NGU5 568 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 OR4C45A6NMZ5 311 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 J3QW42 95 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 TIMM8AO60220 97 aaPredicted RBP11.75□□□□□ -0.53
CD44-224ENST00000526669 LMX1BO60663 402 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 MRPS14O60783 128 aaKnown RBP11.75□□□□□ -0.53
CD44-224ENST00000526669 RPSAP08865 295 aaKnown RBP11.75□□□□□ -0.53
CD44-224ENST00000526669 ZNF250P15622 560 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 PCMT1P22061 227 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 TTKP33981 857 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 ALDH3B1P43353 468 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 TGM4P49221 684 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 FAM3AP98173 230 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 SPHARQ15513 63 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 NEDD8Q15843 81 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 MBNL2Q5VZF2 373 aaKnown RBP11.75□□□□□ -0.53
CD44-224ENST00000526669 FDX2Q6P4F2 183 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 FBXW12Q6X9E4 464 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 ZNF367Q7RTV3 350 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 MUC15Q8N387 334 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 ZNF676Q8N7Q3 588 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 TSPAN14Q8NG11 270 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 OR56B2PQ8NGI1 322 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 OR10AC1Q8NH08 325 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 LIME1Q9H400 295 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 PURGQ9UJV8 347 aaKnown RBP11.75□□□□□ -0.53
CD44-224ENST00000526669 LAMP3Q9UQV4 416 aa11.75□□□□□ -0.53
CD44-224ENST00000526669 UNC79Q9P2D8 2635 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 ITPR2Q14571 2701 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 A0A087WXM4 84 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 A0A0U1RQV5 110 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 A0A1B0GTI1 187 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 A0A1B0GVI7 797 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 VSTM5A8MXK1 200 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 OGG1O15527 345 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 LILRA1O75019 489 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 SOD3P08294 240 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 SMIM18P0DKX4 95 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 RAC2P15153 192 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 CELP19835 753 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 PSMB9P28065 219 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 SERPINF1P36955 418 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 MAGEB1P43366 347 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 GSK3AP49840 483 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 MRPL28Q13084 256 aaKnown RBP11.74□□□□□ -0.53
CD44-224ENST00000526669 NKPD1Q17RQ9 610 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 RPL22L1Q6P5R6 122 aaKnown RBP11.74□□□□□ -0.53
CD44-224ENST00000526669 KCTD8Q6ZWB6 473 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 ZNF611Q8N823 705 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 OR13C5Q8NGS8 318 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 OR5AK2Q8NH90 309 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 DVL3Q92997 716 aaPredicted RBP11.74□□□□□ -0.53
CD44-224ENST00000526669 SPSB4Q96A44 273 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 OPALINQ96PE5 141 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 REPIN1Q9BWE0 567 aaKnown RBP11.74□□□□□ -0.53
CD44-224ENST00000526669 COMMD4Q9H0A8 199 aa11.74□□□□□ -0.53
CD44-224ENST00000526669 IGLV3-9A0A075B6K5 115 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 A6NIN4 97 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 CD300LBA8K4G0 201 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 H3BSA7 217 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 SYT7O43581 403 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 INMTO95050 263 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 ZFPL1O95159 310 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 IGLV3-1P01715 115 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 CD8AP01732 235 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 DANCRP0C864 163 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 UBCP0CG48 685 aaKnown RBP11.73□□□□□ -0.53
CD44-224ENST00000526669 ACHEP22303 614 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 ACKR3P25106 362 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 CCR9P51686 369 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 TAS2R43P59537 309 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 SELENOVP59797 346 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 TNK1Q13470 666 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 TSTQ16762 297 aaKnown RBP11.73□□□□□ -0.53
CD44-224ENST00000526669 MST1LQ2TV78 715 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 CCDC58Q4VC31 144 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 LIPKQ5VXJ0 399 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 DMKNQ6E0U4 476 aaPredicted RBP11.73□□□□□ -0.53
CD44-224ENST00000526669 C1orf174Q8IYL3 243 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 OR51A4Q8NGJ6 313 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 RPS4Y2Q8TD47 263 aa11.73□□□□□ -0.53
CD44-224ENST00000526669 RGP1Q92546 391 aaPredicted RBP11.73□□□□□ -0.53
CD44-224ENST00000526669 UFD1Q92890 307 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms