RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ZNF92Q03936 586 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 TRAP1Q12931 704 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 IKZF1Q13422 519 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 C11orf91Q3C1V1 193 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 WDR38Q5JTN6 314 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 FOXB2Q5VYV0 432 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 SLC18B1Q6NT16 456 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 VTCN1Q7Z7D3 282 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 SPERTQ8NA61 448 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 PLPP7Q8NBV4 271 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 OR4C13Q8NGP0 309 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 OR2T6Q8NHC8 308 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 LZICQ8WZA0 190 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 RORBQ92753 470 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 TNFRSF14Q92956 283 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 SEH1LQ96EE3 360 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 FAM46AQ96IP4 442 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 SSX3Q99909 188 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 ATF6BQ99941 703 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 TMBIM4Q9HC24 238 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 SRA1Q9HD15 236 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 NOP16Q9Y3C1 178 aaKnown RBP16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 COL7A1Q02388 2944 aa16.6■□□□□ 0.25
SQSTM1-215ENST00000514093 PTP4A3O75365 173 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 NDUFB2O95178 105 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 PAX6P26367 422 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 PCK2Q16822 640 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 SNAI3Q3KNW1 292 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 ZBTB37Q5TC79 503 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 GPR139Q6DWJ6 353 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 TSEN54Q7Z6J9 526 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 TSPEARQ8WU66 669 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 R3HDM4Q96D70 268 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 CLPTM1LQ96KA5 538 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 SH3GL1Q99961 368 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 PNRC2Q9NPJ4 139 aaKnown RBP16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 B9D1Q9UPM9 204 aa16.59■□□□□ 0.25
SQSTM1-215ENST00000514093 FXYD1O00168 92 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 IFNW1P05000 195 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 CD28P10747 220 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 ERICH5Q6P6B1 374 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 PGM2L1Q6PCE3 622 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 C11orf88Q6PI97 169 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 CCBE1Q6UXH8 406 aaPredicted RBP16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 ADCK1Q86TW2 530 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 BEND2Q8NDZ0 799 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 OR4S1Q8NGB4 309 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 OR8J3Q8NGG0 315 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 LRRC29Q8WV35 223 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 NDEL1Q9GZM8 345 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 SIGLEC7Q9Y286 467 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 MAB21L2Q9Y586 359 aa16.58■□□□□ 0.24
SQSTM1-215ENST00000514093 DNAH9Q9NYC9 4486 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 IGLV1-36A0A0B4J1U3 117 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 ACOT8O14734 319 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 NDUFB3O43676 98 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 SELLP14151 372 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 CRABP1P29762 137 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 TPTEP56180 551 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 FXYD6P3P58550 94 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 ECH1Q13011 328 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 MICBQ29980 383 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 RRM2BQ7LG56 351 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 C11orf53Q8IXP5 236 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 OR6V1Q8N148 313 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 SLC26A10Q8NG04 563 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 OR5T2Q8NGG2 359 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 OR2AJ1Q8NGZ0 328 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 H1FXQ92522 213 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 DCTN5Q9BTE1 182 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 MRPL15Q9P015 296 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 RAB21Q9UL25 225 aa16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 PRPF19Q9UMS4 504 aaKnown RBP16.57■□□□□ 0.24
SQSTM1-215ENST00000514093 K7EIL1 84 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 M0R135 149 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 AMY2BP19961 511 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 UBE2E1P51965 193 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 GLYATL3Q5SZD4 288 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 DNM1P34Q6PK57 102 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 WDR86Q86TI4 376 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 ZNF799Q96GE5 643 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 GPX7Q96SL4 187 aaPredicted RBP16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 TENM3Q9P273 2699 aa16.56■□□□□ 0.24
SQSTM1-215ENST00000514093 MEGF11A6BM72 1044 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 BHLHE40O14503 412 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 FBXO24O75426 580 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 TFF1P04155 84 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 GMFBP60983 142 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 EMX1Q04741 257 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 HABP2Q14520 560 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 RFX4Q33E94 735 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 SLC36A1Q7Z2H8 476 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 OR56B2PQ8NGI1 322 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 OR51G2Q8NGK0 314 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 MAP6Q96JE9 813 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 NKX3-1Q99801 234 aaPredicted RBP16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 GMPR2Q9P2T1 348 aaKnown RBP16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 CYB5R1Q9UHQ9 305 aa16.55■□□□□ 0.24
SQSTM1-215ENST00000514093 N6AMT1Q9Y5N5 214 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms