RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GPX8Q8TED1 209 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 NEURL2Q9BR09 285 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 RHNO1Q9BSD3 238 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TRAPPC1Q9Y5R8 145 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 RGPD5Q99666 1765 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 hCG_1809904A0A1W2PP81 198 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A1W2PPE2 198 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A1W2PR64 198 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A1W2PRV1 198 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEM218A2RU14 115 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 UPK1AO00322 258 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 BCL2L11O43521 198 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ETHE1O95571 254 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TSPAN12O95859 305 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 CD27P26842 260 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 DCTDP32321 178 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ACAA2P42765 397 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 NKAIN1Q4KMZ8 207 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 PRAMEF5Q5TYX0 476 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 PRAMEF6Q5VXH4 476 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 NKAIN2Q5VXU1 208 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 FAAP20Q6NZ36 180 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEM178AQ8NBL3 297 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 OR52N5Q8NH56 324 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SPPL3Q8TCT6 385 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TXNIPQ9H3M7 391 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 GPR84Q9NQS5 396 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 IL20Q9NYY1 176 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 A0A0B4J203 849 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 LNP1A1A4G5 178 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 A6NDN8 102 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 EFSO43281 561 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 HSBP1O75506 76 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SFTA3P0C7M3 94 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 EDN3P14138 238 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 EN2P19622 333 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 CLLU1Q5K131 121 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 NCR3LG1Q68D85 454 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 C12orf73Q69YU5 71 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 LHFPL2Q6ZUX7 228 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 OR51F2Q8NH61 342 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 GPA33Q99795 319 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 CYSLTR2Q9NS75 346 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SIRT3Q9NTG7 399 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 POLDIP2Q9Y2S7 368 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF816-ZNF321PA0A0X1KG74 233 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ANKRD61A6NGH8 418 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 KLRC4-KLRK1H3BQV0 150 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 M0R135 149 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 CYB561P49447 251 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 GSK3AP49840 483 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 CD81P60033 236 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TTC32Q5I0X7 151 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 RTN4RL1Q86UN2 441 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 OR4C16Q8NGL9 310 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 FBXW5Q969U6 566 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 MCHR2Q969V1 340 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF799Q96GE5 643 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 PARD6GQ9BYG4 376 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SHARPINQ9H0F6 387 aa9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEFF2Q9UIK5 374 aaPredicted RBP9.3□□□□□ -0.92
LIMCH1-203ENST00000396595 SERTM2A0A1B0GWG4 89 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 GUSBP08236 651 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 ACSM4P0C7M7 580 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 GABRA4P48169 554 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 PCBP4P57723 403 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 IL10RAQ13651 578 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 MRPL58Q14197 206 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 FAM74A1Q5RGS3 127 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 OR4A47Q6IF82 309 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEM123Q8N131 208 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 PLA2G12AQ9BZM1 189 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 PLSCR3Q9NRY6 295 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 TMEM30AQ9NV96 361 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 TIMM10BQ9Y5J6 103 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 SDCBPO00560 298 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 FZD6O60353 706 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 WNT11O96014 354 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 CTSLP07711 333 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 FGF9P31371 208 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 PGFP49763 221 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 RPL7L1Q6DKI1 246 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 TMPRSS11FQ6ZWK6 438 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 ZNF485Q8NCK3 441 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 OR1J1Q8NGS3 322 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 MARCH1Q8TCQ1 289 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 EDAQ92838 391 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 LHX4Q969G2 390 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 R3HDMLQ9H3Y0 253 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 ISG20L2Q9H9L3 353 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 DUSP13Q9UII6 198 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 TGM1P22735 817 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 HRH1P35367 487 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 LBX1P52954 281 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 EDDM3AQ14507 147 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 GPNMBQ14956 572 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 COL5A1-AS1Q5SY13 56 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 CA13Q8N1Q1 262 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 OR4F5Q8NH21 305 aa9.29□□□□□ -0.92
LIMCH1-203ENST00000396595 PPP1R1CQ8WVI7 109 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms