RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 EFSO43281 561 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 B4GALT2O60909 372 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 RHBDL1O75783 438 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SCGNO76038 276 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SCGB1D1O95968 90 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 OR5AC1P0C628 307 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 FOLR1P15328 257 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ZNF19P17023 458 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ARRB1P49407 418 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 BLKP51451 505 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 OR12D2P58182 307 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 LTBQ06643 244 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SLAQ13239 276 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ALKBH1Q13686 389 aaKnown RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 AWAT1Q58HT5 328 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 RNASE12Q5GAN4 147 aaKnown RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 EXOSC6Q5RKV6 272 aaKnown RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 METRNLQ641Q3 311 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 TNFAIP8L2Q6P589 184 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 RFLNAQ6ZTI6 216 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 GDF7Q7Z4P5 450 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 KDM8Q8N371 416 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ZNF511Q8NB15 262 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 CPT1CQ8TCG5 803 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 DUSP19Q8WTR2 217 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 PERPQ96FX8 193 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 KLHDC7BQ96G42 594 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 FAM71F1Q96KD3 344 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 C5orf34Q96MH7 638 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SMIM14Q96QK8 99 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 DUSP23Q9BVJ7 150 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 LAT2Q9GZY6 243 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ARRDC1-AS1Q9H2J1 176 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 FGF22Q9HCT0 170 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 RAB18Q9NP72 206 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 NOX4Q9NPH5 578 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 PHPT1Q9NRX4 125 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 HDGFL3Q9Y3E1 203 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 STRAPQ9Y3F4 350 aaKnown RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 OTOGLQ3ZCN5 2332 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 NUMA1Q14980 2115 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ZNF705EA8MWA4 302 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 ADAP1O75689 374 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ONECUT2O95948 504 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 CEACAM1P13688 526 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ADH6P28332 368 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 MSX1P28360 303 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 PYCR1P32322 319 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 SRSF3P84103 164 aaKnown RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 JOSD1Q15040 202 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 MOGAT2Q3SYC2 334 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 HIKESHIQ53FT3 197 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 MESTQ5EB52 335 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 TMEM268Q5VZI3 342 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 FAM166AQ6J272 317 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 STAC2Q6ZMT1 411 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ESPNLQ6ZVH7 1005 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 HIST3H2BBQ8N257 126 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 ZNF610Q8N9Z0 462 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 OR51S1Q8NGJ8 323 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 MARS2Q96GW9 593 aaKnown RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 PRAP1Q96NZ9 151 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 WFDC6Q9BQY6 131 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 TMEM121BQ9BXQ6 578 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 FKRPQ9H9S5 495 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 TMEM9BQ9NQ34 198 aa4.71□□□□□ -1.66
USP28-213ENST00000544967 FAM212BQ9NTI7 297 aaPredicted RBP4.71□□□□□ -1.66
USP28-213ENST00000544967 TRBV2A0A0J9YWF9 115 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 TMEM202A6NGA9 273 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 H0Y8X5 98 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 HRKO00198 91 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 TOX3O15405 576 aaPredicted RBP4.7□□□□□ -1.66
USP28-213ENST00000544967 GFRA3O60609 400 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 GLCEO94923 617 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 F12P00748 615 aaPredicted RBP4.7□□□□□ -1.66
USP28-213ENST00000544967 CST4P01036 141 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 GCGP01275 180 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 HCKP08631 526 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 TACSTD2P09758 323 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 OR8G3PP0DMU2 310 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 GTF2F2P13984 249 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 ITPKBP27987 946 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 SULT1A1P50225 295 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 NPY4RP50391 375 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 RASGEF1BQ0VAM2 473 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 FUT5Q11128 374 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 KIAA0141Q14154 515 aaPredicted RBP4.7□□□□□ -1.66
USP28-213ENST00000544967 SLBPQ14493 270 aaKnown RBP eCLIP4.7□□□□□ -1.66
USP28-213ENST00000544967 TOMM34Q15785 309 aaPredicted RBP4.7□□□□□ -1.66
USP28-213ENST00000544967 ZNF750Q32MQ0 723 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 COA6Q5JTJ3 125 aaKnown RBP4.7□□□□□ -1.66
USP28-213ENST00000544967 PRAMEF14Q5SWL7 426 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 PRAMEF17Q5VTA0 474 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 OPN5Q6U736 354 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 RNF175Q8N4F7 328 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 OR13C8Q8NGS7 320 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 ZNF775Q96BV0 537 aaPredicted RBP4.7□□□□□ -1.66
USP28-213ENST00000544967 PBDC1Q9BVG4 233 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 SCRT1Q9BWW7 348 aa4.7□□□□□ -1.66
USP28-213ENST00000544967 RGCCQ9H4X1 137 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms