RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 C10orf128Q5T292 105 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 STEAP1BQ6NZ63 245 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 GGNQ86UU5 652 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 ANGPTL5Q86XS5 388 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 C9orf62Q8N4C0 152 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 NABP1Q96AH0 204 aa14.39□□□□□ -0.11
COL4A1-204ENST00000543140 M0QYG6 137 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 TNFRSF10AO00220 468 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 CXCL13O43927 109 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF780AO75290 641 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 LPLP06858 475 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 RAC3P60763 192 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 GRB2P62993 217 aaKnown RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 RBMS2Q15434 407 aaKnown RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 AWAT2Q6E213 333 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 DHRS13Q6UX07 377 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 CHST4Q8NCG5 386 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF436Q9C0F3 470 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 WIPF3A6NGB9 483 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 PCNX2A6NKB5 2137 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 VSIG10L2P0DP72 767 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 VSIG8P0DPA2 414 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 GABRG1Q8N1C3 465 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 MEIOBQ8N635 442 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 GJC3Q8NFK1 279 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 PGAM5Q96HS1 289 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 TRAF4Q9BUZ4 470 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 RANBP3Q9H6Z4 567 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 DLL4Q9NR61 685 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 LRFN1Q9P244 771 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 FOXD3Q9UJU5 478 aaPredicted RBP14.38□□□□□ -0.11
COL4A1-204ENST00000543140 RAB22AQ9UL26 194 aa14.38□□□□□ -0.11
COL4A1-204ENST00000543140 METTL21EPA6NDL7 271 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 DBHP09172 617 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 AVPR2P30518 371 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 ACTBP60709 375 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 ACTG1P63261 375 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 CSRP2Q16527 193 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF529Q6P280 563 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 CHMP1BQ7LBR1 199 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.37□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF101Q8IZC7 436 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 LIN37Q96GY3 246 aaPredicted RBP14.37□□□□□ -0.11
COL4A1-204ENST00000543140 GON7Q9BXV9 100 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 RAB27BO00194 218 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 CD96P40200 585 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 TMEM164Q5U3C3 297 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 NLRC3Q7RTR2 1065 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 RTN4RL2Q86UN3 420 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 OR5AS1Q8N127 324 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 GALNT16Q8N428 558 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 OR2T35Q8NGX2 323 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 OR10D3Q8NH80 312 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 FBXO17Q96EF6 278 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 TINAGL1Q9GZM7 467 aaPredicted RBP14.37□□□□□ -0.11
COL4A1-204ENST00000543140 CA10Q9NS85 328 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 MGAT4CQ9UBM8 478 aa14.37□□□□□ -0.11
COL4A1-204ENST00000543140 CREBL2O60519 120 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-204ENST00000543140 MT-CO3P00414 261 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CSN2P05814 226 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 HCKP08631 526 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF24P17028 368 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 QRFPP83859 136 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 RSPO1Q2MKA7 263 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-204ENST00000543140 DTX1Q86Y01 620 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 C20orf196Q8IYI0 205 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 OR4S1Q8NGB4 309 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 NPRL2Q8WTW4 380 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 KCNE4Q8WWG9 221 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 LOXL4Q96JB6 756 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 LYZL4Q96KX0 146 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 SLX1AQ9BQ83 275 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 UQCC2Q9BRT2 126 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CRLF2Q9HC73 371 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 NPDC1Q9NQX5 325 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-204ENST00000543140 PLEK2Q9NYT0 353 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 EMC3Q9P0I2 261 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 KLK13Q9UKR3 277 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 FLVCR1Q9Y5Y0 555 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CCDC187A0A096LP49 1063 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 RAB3DO95716 219 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 BPNT1O95861 308 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 POU3F2P20265 443 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-204ENST00000543140 RAB6AP20340 208 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 OR3A4PP47883 348 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF84P51523 738 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CLDN15P56746 228 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CDH24Q86UP0 819 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 PTX4Q96A99 478 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 PNPLA2Q96AD5 504 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 ZNF845Q96IR2 970 aaPredicted RBP14.36□□□□□ -0.11
COL4A1-204ENST00000543140 SIGLEC12Q96PQ1 595 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 UTP23Q9BRU9 249 aaKnown RBP14.36□□□□□ -0.11
COL4A1-204ENST00000543140 HES7Q9BYE0 225 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CHST6Q9GZX3 395 aa14.36□□□□□ -0.11
COL4A1-204ENST00000543140 CACNA1HO95180 2353 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 CYB5AP00167 134 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 ERCC1P07992 297 aaPredicted RBP14.35□□□□□ -0.11
COL4A1-204ENST00000543140 DNASE1P24855 282 aa14.35□□□□□ -0.11
COL4A1-204ENST00000543140 TAS2R19P59542 299 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms