RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 TACSTD2P09758 323 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 TUBG1P23258 451 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 GCH1P30793 250 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 KLF3P57682 345 aaPredicted RBP25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 GFOD2Q3B7J2 385 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 MBNL2Q5VZF2 373 aaKnown RBP25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 PAMR1Q6UXH9 720 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 OR8B12Q8NGG6 310 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 RORBQ92753 470 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 OR10A2Q9H208 303 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 DUSP21Q9H596 190 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 MOB1AQ9H8S9 216 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 TUBG2Q9NRH3 451 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 CHCHD3Q9NX63 227 aaKnown RBP25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 ZNF319Q9P2F9 582 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 LAMP3Q9UQV4 416 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 NAV2Q8IVL1 2488 aa25.41■■□□□ 1.66
LIMCH1-211ENST00000509638 CSMD1Q96PZ7 3565 aa25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 CLPTM1O96005 669 aa25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 PSMB10P40306 273 aa25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 AGAP6Q5VW22 663 aa25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 DTX2Q86UW9 622 aa25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 PELI1Q96FA3 418 aa25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 MYEF2Q9P2K5 600 aaKnown RBP25.4■■□□□ 1.66
LIMCH1-211ENST00000509638 ATE1O95260 518 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 PRSS12P56730 875 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 GK2Q14410 553 aaPredicted RBP25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 EFNB3Q15768 340 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 TIGD6Q17RP2 521 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 TMEM255AQ5JRV8 349 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 BCL2L15Q5TBC7 163 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 OR2G6Q5TZ20 316 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 FBXW12Q6X9E4 464 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 KLHL36Q8N4N3 616 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 PBOV1Q9GZY1 135 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 ERVK-18Q9QC07 812 aa25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 NUFIP1Q9UHK0 495 aaKnown RBP25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 CAB39Q9Y376 341 aaPredicted RBP25.39■■□□□ 1.66
LIMCH1-211ENST00000509638 IGLV3-9A0A075B6K5 115 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 A0A1W2PPW3 197 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 XRCC2O43543 280 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 ZNF92Q03936 586 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 MRPL21Q7Z2W9 205 aaKnown RBP25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 SIGLEC11Q96RL6 698 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 CCL19Q99731 98 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 CBLN4Q9NTU7 201 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 SNX5Q9Y5X3 404 aa25.39■■□□□ 1.65
LIMCH1-211ENST00000509638 ACOD1A6NK06 481 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 B9A039 149 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 RGS10O43665 173 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 EEF1B2P24534 225 aaKnown RBP25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 SELENOVP59797 346 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 MST1LQ2TV78 715 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 TMPRSS11AQ6ZMR5 421 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 SPRYD4Q8WW59 207 aaPredicted RBP25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 RNF166Q96A37 237 aaPredicted RBP25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 CMBLQ96DG6 245 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 REEP6Q96HR9 211 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 LURAP1Q96LR2 239 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 TRAF4Q9BUZ4 470 aaPredicted RBP25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 G6PC2Q9NQR9 355 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 OR52A1Q9UKL2 312 aa25.38■■□□□ 1.65
LIMCH1-211ENST00000509638 MYL12BO14950 172 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 CD8AP01732 235 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 MT-ND5P03915 603 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 SNRPD2P62316 118 aaKnown RBP25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 PSG7Q13046 419 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 C11orf71Q6IPW1 123 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 PGAP1Q75T13 922 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 OR52N1Q8NH53 320 aa25.37■■□□□ 1.65
LIMCH1-211ENST00000509638 TMEM129A0AVI4 362 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 IGHV3-13P01766 116 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 RAC2P15153 192 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 SWI5Q1ZZU3 235 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 CATSPERDQ86XM0 798 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 PPP1R14AQ96A00 147 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 SPSB4Q96A44 273 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 CDCA4Q9BXL8 241 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 PLEKHA6Q9Y2H5 1048 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 LRCH1Q9Y2L9 728 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 NOTCH2Q04721 2471 aa25.36■■□□□ 1.65
LIMCH1-211ENST00000509638 MT-ND2P03891 347 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 EVX1P49640 407 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 GABARAPL2P60520 117 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 WDR38Q5JTN6 314 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 EGFL6Q8IUX8 553 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 PRSS35Q8N3Z0 413 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 SGK3Q96BR1 496 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 CCDC90BQ9GZT6 254 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 OPA3Q9H6K4 179 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 SLC22A13Q9Y226 551 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 PDZD2O15018 2839 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 TIMM8AO60220 97 aaPredicted RBP25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 TTRP02766 147 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 RAF1P04049 648 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 HTR1AP08908 422 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 NKPD1Q17RQ9 610 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 ALKBH6Q3KRA9 238 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 COMMD2Q86X83 199 aa25.35■■□□□ 1.65
LIMCH1-211ENST00000509638 OR2G2Q8NGZ5 317 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms