RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF721Q8TF20 911 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PACRGQ96M98 296 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 IL17FQ96PD4 163 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TP53TG5Q9Y2B4 290 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 H2BFMP0C1H6 154 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ACHEP22303 614 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PRSS3P35030 304 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PRPS1P60891 318 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TMEM69Q5SWH9 247 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ABHD12BQ7Z5M8 362 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 M1APQ8TC57 530 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PRRT1Q99946 306 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF700Q9H0M5 742 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 KIAA1324LA8MWY0 1029 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PROB1E7EW31 1015 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TNFRSF10CO14798 259 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 DIRAS3O95661 229 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 GPR75O95800 540 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PTAFRP25105 342 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 TNFRSF4P43489 277 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 DVL1P1P54792 670 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 F2RL1P55085 397 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 HERV-K104P61576 105 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 RAP1AP62834 184 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 EIF5AP63241 154 aaKnown RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 DAZAP2Q15038 168 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ARL6IP1Q15041 203 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 PON3Q15166 354 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZNF440Q8IYI8 595 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OR4D6Q8NGJ1 314 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 OR6X1Q8NH79 312 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ZDHHC12Q96GR4 267 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 MYADMQ96S97 322 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 ANGPTL4Q9BY76 406 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 G6PC2Q9NQR9 355 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 C5AR2Q9P296 337 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 SLC7A7Q9UM01 511 aa4.78□□□□□ -1.64
SYNE1-220ENST00000471834 COLQQ9Y215 455 aaPredicted RBP4.78□□□□□ -1.64
SYNE1-220ENST00000471834 IGLV3-32A0A0A0MS00 114 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 CCDC163A0A0D9SF12 145 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 DHRS7CA6NNS2 312 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 C2orf74A8MZ97 194 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TSPAN2O60636 221 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TOXO94900 526 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 GLP1RP43220 463 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 INSM1Q01101 510 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 PPA1Q15181 289 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 OR1Q1Q15612 314 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ANKRD39Q53RE8 183 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 KIRREL2Q6UWL6 708 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF574Q6ZN55 896 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 FCRLAQ7L513 359 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TRAPPC6BQ86SZ2 158 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF283Q8N7M2 679 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 NOXO1Q8NFA2 376 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 FGF14Q92915 247 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF707Q96C28 371 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 MRPL13Q9BYD1 178 aaKnown RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 NELFAQ9H3P2 528 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RXFP3Q9NSD7 469 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 KIAA1456Q9P272 454 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SLC23A2Q9UGH3 650 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 A0A1W2PS29 197 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 CD3DP04234 171 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 DANCRP0C864 163 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 DRD1P21728 446 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 DRD3P35462 400 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RAB1AP62820 205 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RPS21P63220 83 aaKnown RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 HTRA4P83105 476 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 AARDQ4LEZ3 155 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 AADACL3Q5VUY0 350 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TMPPEQ6ZT21 453 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 VRK2Q86Y07 508 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RELL2Q8NC24 303 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 PARD6GQ9BYG4 376 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 OR5H14A6NHG9 310 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ARPC5O15511 151 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 OBSL1O75147 1896 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 F10P00742 488 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 IFNA21P01568 189 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 FOLR3P41439 243 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SQSTM1Q13501 440 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ZNF74Q16587 644 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 PRICKLE4Q2TBC4 344 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 YOD1Q5VVQ6 348 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 RAET1LQ5VY80 246 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 TMEM225Q6GV28 225 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 HAGHLQ6PII5 290 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 DNM1P34Q6PK57 102 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4.77□□□□□ -1.65
SYNE1-220ENST00000471834 ASB17Q8WXJ9 295 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 MUCL1Q96DR8 90 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 HSPA12BQ96MM6 686 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 GINS3Q9BRX5 216 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 PLEKHA2Q9HB19 425 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SMCO4Q9NRQ5 59 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 SRPK3Q9UPE1 567 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 AMY2BP19961 511 aa4.77□□□□□ -1.65
SYNE1-220ENST00000471834 FASLGP48023 281 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 116.2 ms