RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 C10orf91Q5T1B1 145 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 AVPI1Q5T686 147 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 KHDRBS2Q5VWX1 349 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 FRG2Q64ET8 278 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 CLEC6AQ6EIG7 209 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 FAM166AQ6J272 317 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TRIM40Q6P9F5 258 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ATRAIDQ6UW56 229 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 Q6ZPB1 254 aaPredicted RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SLC16A13Q7RTY0 426 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MRPL52Q86TS9 123 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 RNF130Q86XS8 419 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PAQR4Q8N4S7 273 aaPredicted RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MS4A15Q8N5U1 240 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 LINC00482Q8N8I6 264 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 OR2L5Q8NG80 312 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 OR11G2Q8NGC1 345 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 CD300LFQ8TDQ1 290 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GRHL3Q8TE85 626 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 APOBEC4Q8WW27 367 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 UBE2E3Q969T4 207 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 L3HYPDHQ96EM0 354 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SCMH1Q96GD3 660 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SMIM10Q96HG1 83 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NARS2Q96I59 477 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF479Q96JC4 524 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MARK4Q96L34 752 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ZNF382Q96SR6 550 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SLC30A2Q9BRI3 323 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GATA5Q9BWX5 397 aaPredicted RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SRRQ9GZT4 340 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ING2Q9H160 280 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 OR51B6Q9H340 312 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 GAL3ST2Q9H3Q3 398 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TMPRSS5Q9H3S3 457 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ELOVL6Q9H5J4 265 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 FOLH1BQ9HBA9 442 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PNO1Q9NRX1 252 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ACSS1Q9NUB1 689 aaPredicted RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 C14orf105Q9NVL8 296 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 MED11Q9P086 117 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 KCNE5Q9UJ90 142 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ERRFI1Q9UJM3 462 aaPredicted RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 ING1Q9UK53 422 aaPredicted RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NXT1Q9UKK6 140 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 B9D1Q9UPM9 204 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 PTGDR2Q9Y5Y4 395 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 NPTNQ9Y639 398 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 V9GYH0 126 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 CCDC88CQ9P219 2028 aa4.03□□□□□ -1.76
SF3B1-202ENST00000409915 TLN1Q9Y490 2541 aaKnown RBP4.03□□□□□ -1.76
SF3B1-202ENST00000409915 SPTA1P02549 2419 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 IGHV1-45A0A0A0MS14 117 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 NSG1A0A0A6YYJ2 146 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 A0A1W2PP18 115 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 A0A1W2PPK0 400 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 DHRS12A0PJE2 317 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 TMEM200CA6NKL6 621 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 WASHC1A8K0Z3 465 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 EFCAB9A8MZ26 197 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 E9PQ18 207 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 MS4A18H0YCH9 400 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 J3QR06 171 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 SLC1A7O00341 560 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 MANBAO00462 879 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 CHP2O43745 196 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 OR10H2O60403 315 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 LDB3O75112 727 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 KRT33AO76009 404 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 RPP14O95059 124 aaKnown RBP4.02□□□□□ -1.77
SF3B1-202ENST00000409915 AIFM1O95831 613 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 F10P00742 488 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 B4GALT1P15291 398 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 EFNA1P20827 205 aaPredicted RBP4.02□□□□□ -1.77
SF3B1-202ENST00000409915 PRPS1L1P21108 318 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 HIST1H1TP22492 207 aaPredicted RBP4.02□□□□□ -1.77
SF3B1-202ENST00000409915 IGFBP5P24593 272 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 FEN1P39748 380 aaKnown RBP4.02□□□□□ -1.77
SF3B1-202ENST00000409915 TNFSF10P50591 281 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 LIM2P55344 173 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 RAB38P57729 211 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 NCS1P62166 190 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 UBE2V1Q13404 147 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 KEAP1Q14145 624 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 GPR176Q14439 515 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 NSDHLQ15738 373 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 ZNF239Q16600 458 aaKnown RBP4.02□□□□□ -1.77
SF3B1-202ENST00000409915 RFX4Q33E94 735 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 GLYR1Q49A26 553 aaPredicted RBP4.02□□□□□ -1.77
SF3B1-202ENST00000409915 GGTA1PQ4G0N0 100 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 XKR7Q5GH72 579 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 BEX5Q5H9J7 111 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 ACER2Q5QJU3 275 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 RAET1LQ5VY80 246 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 UQCC3Q6UW78 93 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 COMMD6Q7Z4G1 85 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 P4HA3Q7Z4N8 544 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 ANKRD37Q7Z713 158 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 DHFR2Q86XF0 187 aa4.02□□□□□ -1.77
SF3B1-202ENST00000409915 FOXRED2Q8IWF2 684 aa4.02□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms