RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 PPA2Q9H2U2 334 aa16.72■□□□□ 0.27
SQSTM1-215ENST00000514093 ZNRD1Q9P1U0 126 aa16.72■□□□□ 0.27
SQSTM1-215ENST00000514093 PRSS37A4D1T9 235 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 EFCAB9A8MZ26 197 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 DVL1O14640 695 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 ANGPT2O15123 496 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 SLC16A7O60669 478 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 FBP1P09467 338 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 YAP1P46937 504 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 SLC9A3P48764 834 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 SLC18A1P54219 525 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 DLX1P56177 255 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 LSM6P62312 80 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 GK2Q14410 553 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 RSPO1Q2MKA7 263 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 CNTD2Q9H8S5 307 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 RHCGQ9UBD6 479 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 A4GNTQ9UNA3 340 aa16.71■□□□□ 0.27
SQSTM1-215ENST00000514093 GABRA5P31644 462 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 ST3GAL3Q11203 375 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 CDONQ4KMG0 1287 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 VAX1Q5SQQ9 334 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 CORO6Q6QEF8 472 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 C1orf122Q6ZSJ8 110 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 NAA40Q86UY6 237 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 GLB1L2Q8IW92 636 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 LYG1Q8N1E2 194 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 ST8SIA4Q92187 359 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 SGCDQ92629 289 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 C7orf26Q96N11 449 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 ZNF570Q96NI8 536 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 PARD6BQ9BYG5 372 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 SYT4Q9H2B2 425 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 FN3KRPQ9HA64 309 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 SIRT7Q9NRC8 400 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 AURKAIP1Q9NWT8 199 aaPredicted RBP16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 FBLN5Q9UBX5 448 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 RPS6KA6Q9UK32 745 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 POLR1DQ9Y2S0 133 aa16.7■□□□□ 0.26
SQSTM1-215ENST00000514093 DNAH3Q8TD57 4116 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 KHDRBS3O75525 346 aaKnown RBP16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 CD14P08571 375 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 ZNF26P17031 533 aaPredicted RBP16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 CA6P23280 308 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 PRKCDQ05655 676 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 MEP1BQ16820 701 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 GALNT4Q8N4A0 578 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 PPP1R14AQ96A00 147 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 SLCO4A1Q96BD0 722 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 ONECUT1Q9UBC0 465 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 ATPIF1Q9UII2 106 aa16.69■□□□□ 0.26
SQSTM1-215ENST00000514093 IGHV3OR15-7A0A075B7D8 119 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 TRAV38-1A0A0B4J264 116 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 A0A1B0GW55 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 OOEPA6NGQ2 149 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L2P0CJ85 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L3P0CJ86 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L4P0CJ87 422 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L5P0CJ88 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L6P0CJ89 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L7P0CJ90 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 GPR4P46093 362 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 CENPAP49450 140 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 ELF3P78545 371 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 OR8G1Q15617 311 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 RABL3Q5HYI8 236 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4L9Q6RFH8 374 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 COLCA1Q6ZS62 124 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 ZNF826PQ6ZT77 177 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 FAM122BQ7Z309 247 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 CROCCP2Q86T23 111 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 FAM90A1Q86YD7 464 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 PNKDQ8N490 385 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 PPP1R35Q8TAP8 253 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 SPRYD4Q8WW59 207 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 COQ7Q99807 217 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 NECAP2Q9NVZ3 263 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 DUX4Q9UBX2 424 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 RPUSD1Q9UJJ7 312 aaKnown RBP16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 CAB39Q9Y376 341 aaPredicted RBP16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 LHFPL6Q9Y693 200 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 NOTCH3Q9UM47 2321 aa16.68■□□□□ 0.26
SQSTM1-215ENST00000514093 A0A1B0GVI7 797 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 HTR3EA5X5Y0 456 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 F5H5K5 113 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 CDC42EP2O14613 210 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 NDUFA2O43678 99 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 AHCYL1O43865 530 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 NANOGP8Q6NSW7 305 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 TBPL2Q6SJ96 375 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 GJC3Q8NFK1 279 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 TPD52L3Q96J77 140 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 PRRC1Q96M27 445 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 ZNF583Q96ND8 569 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 NUAK2Q9H093 628 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 RABEP2Q9H5N1 569 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 C1orf123Q9NWV4 160 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 KPTNQ9Y664 436 aa16.67■□□□□ 0.26
SQSTM1-215ENST00000514093 RNASEK-C17orf49H0YIS7 233 aa16.66■□□□□ 0.26
SQSTM1-215ENST00000514093 J3KTA2 159 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms