RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ZNF501Q96CX3 271 aaPredicted RBP16.67■□□□□ 0.26
CPSF3-201ENST00000238112 MRPS24Q96EL2 167 aaKnown RBP16.67■□□□□ 0.26
CPSF3-201ENST00000238112 ZNF471Q9BX82 626 aaPredicted RBP16.67■□□□□ 0.26
CPSF3-201ENST00000238112 ALKBH4Q9NXW9 302 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 B3GALT5Q9Y2C3 310 aa16.67■□□□□ 0.26
CPSF3-201ENST00000238112 IFNA6P05013 189 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 GNB3P16520 340 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 CSNK1EP49674 416 aaKnown RBP16.66■□□□□ 0.26
CPSF3-201ENST00000238112 CLDN6P56747 220 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 SLC22A6Q4U2R8 563 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 AWAT2Q6E213 333 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 CADM4Q8NFZ8 388 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 STT3BQ8TCJ2 826 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 MITD1Q8WV92 249 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 NUDT22Q9BRQ3 303 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 DUSP15Q9H1R2 295 aaPredicted RBP16.66■□□□□ 0.26
CPSF3-201ENST00000238112 LDAHQ9H6V9 325 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 CYB5R1Q9UHQ9 305 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 PRELID1Q9Y255 219 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 SLC5A6Q9Y289 635 aa16.66■□□□□ 0.26
CPSF3-201ENST00000238112 LIPT2A6NK58 231 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 ZNF354AO60765 605 aaPredicted RBP16.65■□□□□ 0.26
CPSF3-201ENST00000238112 IL2RAP01589 272 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 HLA-GP17693 338 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 VAMP1P23763 118 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 ATP1B3P54709 279 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 QRFPP83859 136 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 BEX5Q5H9J7 111 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 ACOT7LQ6ZUV0 252 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 APCDD1LQ8NCL9 501 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 THAP6Q8TBB0 222 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 CASTOR1Q8WTX7 329 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 MRGPRFQ96AM1 343 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 FOXQ1Q9C009 403 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 WDR13Q9H1Z4 485 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 SERINC1Q9NRX5 453 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 ATXN7L1Q9ULK2 861 aaPredicted RBP16.65■□□□□ 0.26
CPSF3-201ENST00000238112 POLR1DQ9Y2S0 133 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 SHISA8B8ZZ34 492 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 APOC3P02656 99 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 ERCC1P07992 297 aaPredicted RBP16.65■□□□□ 0.26
CPSF3-201ENST00000238112 ZNF20P17024 532 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 PRKXP51817 358 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 FAHD2BQ6P2I3 314 aaPredicted RBP16.65■□□□□ 0.26
CPSF3-201ENST00000238112 COX15Q7KZN9 410 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 DTWD2Q8NBA8 298 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 FAHD2AQ96GK7 314 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 SELENOIQ9C0D9 397 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 DNTTIP1Q9H147 329 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 KLRF1Q9NZS2 232 aa16.65■□□□□ 0.26
CPSF3-201ENST00000238112 GLB1P16278 677 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 TBPP20226 339 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 LAP3P28838 519 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF93P35789 620 aaPredicted RBP16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF41P51814 821 aaPredicted RBP16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF273Q14593 569 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ANGPTL5Q86XS5 388 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 KMT5CQ86Y97 462 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF101Q8IZC7 436 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 OR10R2Q8NGX6 335 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 PHYHIPLQ96FC7 376 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 TAS2R3Q9NYW6 316 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 SEMA5BQ9P283 1151 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 RPH3AQ9Y2J0 694 aaPredicted RBP16.64■□□□□ 0.25
CPSF3-201ENST00000238112 RNF222A6NCQ9 220 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 TRIM77I1YAP6 450 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 HEXBP07686 556 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 GIMD1P0DJR0 217 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 MYF5P13349 255 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 AKR1C4P17516 323 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 AVPR2P30518 371 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 GSK3AP49840 483 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 CLRN1P58418 232 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ELP2Q6IA86 826 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 MOB3CQ70IA8 216 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 RHOUQ7L0Q8 258 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 KCTD9Q7L273 389 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ANKRD37Q7Z713 158 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 COMMD2Q86X83 199 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 INO80EQ8NBZ0 244 aaPredicted RBP16.64■□□□□ 0.25
CPSF3-201ENST00000238112 OR10S1Q8NGN2 331 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 ZNF75AQ96N20 296 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 SLC22A11Q9NSA0 550 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 SRPK3Q9UPE1 567 aa16.64■□□□□ 0.25
CPSF3-201ENST00000238112 A0A1W2PNV4 684 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 THEM4Q5T1C6 240 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 OR51E1Q8TCB6 317 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 MESP1Q9BRJ9 268 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 TGIF2Q9GZN2 237 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 SEC61A2Q9H9S3 476 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 PPP4R1LQ9P1A2 415 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 KCNK7Q9Y2U2 307 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 OR2AT4A6NND4 320 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 SRFP11831 508 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 EMP2P54851 167 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 CFAP77Q6ZQR2 320 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 TMEM17Q86X19 198 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 UEVLDQ8IX04 471 aa16.63■□□□□ 0.25
CPSF3-201ENST00000238112 ADAD2Q8NCV1 583 aaKnown RBP16.63■□□□□ 0.25
CPSF3-201ENST00000238112 OR2AJ1Q8NGZ0 328 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms