RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZNF223Q9UK11 482 aaPredicted RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF281Q9Y2X9 895 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF337Q9Y3M9 751 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 R4GN57 208 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 SPACA6W5XKT8 324 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 F5P12259 2224 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TTC28Q96AY4 2481 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 BTBD17A6NE02 478 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR52A4PA6NMU1 304 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF716A6NP11 495 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TRDCB7Z8K6 153 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 DVL1O14640 695 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 FADS1O60427 444 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 CHRM4P08173 479 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF735P0CB33 412 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZBTB25P24278 435 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 CDK2P24941 298 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 RPE65Q16518 533 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 RBM45Q8IUH3 476 aaKnown RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF547Q8IVP9 402 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 LRRC18Q8N456 261 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF383Q8NA42 475 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 C17orf47Q8NEP4 570 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 BBS1Q8NFJ9 593 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR4K14Q8NGD5 310 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR56A1Q8NGH5 318 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR52E1Q8NGJ3 308 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR52B4Q8NGK2 314 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR6K2Q8NGY2 324 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR4C6Q8NH72 309 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 GLYATL1Q969I3 302 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TM4SF18Q96CE8 201 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TCTN2Q96GX1 697 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 KIRREL1Q96J84 757 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF75AQ96N20 296 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 DERL3Q96Q80 235 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 EXO5Q9H790 373 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 SIRT7Q9NRC8 400 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 GDF2Q9UK05 429 aaPredicted RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 CCDC187A0A096LP49 1063 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 MARCH11A6NNE9 402 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZNF724A8MTY0 619 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 LMO7DNF2Z398 122 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 K7ESM1 405 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 M0QZK8 103 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 NUDT21O43809 227 aaKnown RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 GGCTO75223 188 aaKnown RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 CLDN7O95471 211 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 PPP1R3DO95685 299 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 CRHP06850 196 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 GUSBP08236 651 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 METTL15P1P0C7V9 234 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 PET100P0DJ07 73 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 BMP7P18075 431 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 LMO1P25800 156 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TACR3P29371 465 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 FASLGP48023 281 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TAS2R50P59544 299 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 HNRNPKP61978 463 aaKnown RBP eCLIP4.73□□□□□ -1.65
USP28-213ENST00000544967 EIPR1Q53HC9 387 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 C9orf152Q5JTZ5 239 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 STEAP1BQ6NZ63 245 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TMEM205Q6UW68 189 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 VRK2Q86Y07 508 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 HSD17B11Q8NBQ5 300 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 LFNGQ8NES3 379 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR13H1Q8NG92 308 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 OR4K15Q8NH41 348 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TERB2Q8NHR7 220 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 HPSE2Q8WWQ2 592 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 SMPDL3BQ92485 455 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 TNFRSF14Q92956 283 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 FOXRED1Q96CU9 486 aaPredicted RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 WDR92Q96MX6 357 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 CLCC1Q96S66 551 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 NAA11Q9BSU3 229 aaPredicted RBP4.73□□□□□ -1.65
USP28-213ENST00000544967 METTL7AQ9H8H3 244 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 DKK4Q9UBT3 224 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 DYRK1BQ9Y463 629 aa4.73□□□□□ -1.65
USP28-213ENST00000544967 CACNA1GO43497 2377 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ATG2BQ96BY7 2078 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 TRBV5-7A0A0A0MS05 114 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 A0A1W2PPE3 182 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PRSS38A1L453 326 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 OR2AG2A6NM03 316 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 WNT11O96014 354 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 THBS1P07996 1170 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ATP1B2P14415 290 aaPredicted RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 TBXA2RP21731 343 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 AHRP35869 848 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 OC90Q02509 493 aaPredicted RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 FAM27D1Q5T7N8 215 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 PRAMEF20Q5VT98 475 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 ARMC6Q6NXE6 501 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 FCRLAQ7L513 359 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 OR10H4Q8NGA5 316 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 MVB12AQ96EY5 273 aa4.72□□□□□ -1.65
USP28-213ENST00000544967 RCC1LQ96I51 464 aaKnown RBP4.72□□□□□ -1.65
USP28-213ENST00000544967 FAM46AQ96IP4 442 aaKnown RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms